Variant report

Variant	rs2088682
Chromosome Location	chr12:123162903-123162904
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10444445	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10450705	0.81[ASN][1000 genomes]
rs10773429	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10773433	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10773435	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10773436	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10773445	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10773474	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10847452	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10847456	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11059328	0.81[ASN][1000 genomes]
rs11059333	0.81[ASN][1000 genomes]
rs11059337	0.81[ASN][1000 genomes]
rs11059356	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11059418	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11059504	0.89[ASN][1000 genomes]
rs11059507	0.89[ASN][1000 genomes]
rs12231722	0.81[ASN][1000 genomes]
rs2088678	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2649912	0.86[ASN][1000 genomes]
rs531791	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55776099	0.82[ASN][1000 genomes]
rs61955029	0.89[ASN][1000 genomes]
rs6489204	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7305589	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7309056	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7958805	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7959072	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7969474	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7970419	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7972971	0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:123154800-123163200	Weak transcription	Osteobl	bone
2	chr12:123155800-123163000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr12:123157400-123163200	Weak transcription	HepG2	liver
4	chr12:123157800-123163600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr12:123161600-123164600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr12:123161600-123164600	Enhancers	Adipose Nuclei	Adipose
7	chr12:123161600-123164600	Enhancers	Placenta	Placenta
8	chr12:123161800-123165000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr12:123162000-123163000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr12:123162200-123163000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr12:123162200-123163200	Weak transcription	NHDF-Ad	bronchial
12	chr12:123162200-123163400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr12:123162200-123164800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr12:123162400-123163400	Enhancers	A549	lung
15	chr12:123162600-123164600	Enhancers	HUVEC	blood vessel
16	chr12:123162600-123164800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr12:123162600-123164800	Enhancers	HSMM	muscle
18	chr12:123162600-123164800	Enhancers	NHLF	lung
19	chr12:123162600-123166400	Enhancers	Primary neutrophils fromperipheralblood	blood

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