Variant report

Variant	rs7969474
Chromosome Location	chr12:123165562-123165563
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:123163325..123167706-chr12:123172558..123174898,3	MCF-7	breast:
2	chr12:123143377..123146138-chr12:123164475..123166669,2	MCF-7	breast:
3	chr12:123164745..123167485-chr12:123170357..123173232,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000256249	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10444445	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10773429	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10773433	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10773435	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10773436	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10773445	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10773474	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10847452	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10847456	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11059356	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11059418	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11059504	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11059507	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2088678	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2088682	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2649912	0.82[ASN][1000 genomes]
rs531791	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61955029	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6489204	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7305589	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7309056	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7958805	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7959072	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7970419	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7972971	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:123162600-123166400	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr12:123163000-123167600	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr12:123163200-123166400	Enhancers	Primary B cells from cord blood	blood
4	chr12:123163600-123166200	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr12:123164200-123166000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr12:123164200-123166000	Enhancers	HepG2	liver
7	chr12:123164200-123171600	Weak transcription	Esophagus	oesophagus
8	chr12:123164200-123171800	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr12:123164600-123165800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr12:123164600-123166000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr12:123164600-123166000	Weak transcription	Placenta	Placenta
12	chr12:123164600-123166200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr12:123164600-123166200	Weak transcription	Adipose Nuclei	Adipose
14	chr12:123164600-123166400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr12:123164600-123166400	Weak transcription	Hela-S3	cervix
16	chr12:123164800-123165800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr12:123164800-123166000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr12:123164800-123166000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr12:123164800-123166000	Weak transcription	GM12878-XiMat	blood
20	chr12:123164800-123166000	Weak transcription	HSMMtube	muscle
21	chr12:123164800-123166000	Weak transcription	NHDF-Ad	bronchial
22	chr12:123164800-123166200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr12:123164800-123166200	Weak transcription	A549	lung
24	chr12:123164800-123166200	Weak transcription	NHLF	lung
25	chr12:123164800-123166200	Weak transcription	Osteobl	bone
26	chr12:123164800-123166400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr12:123165400-123166400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr12:123165400-123166600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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