Variant report

Variant	rs7970419
Chromosome Location	chr12:123167344-123167345
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:123163325..123167706-chr12:123172558..123174898,3	MCF-7	breast:
2	chr12:123164745..123167485-chr12:123170357..123173232,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000256249	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10444445	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10773429	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10773433	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10773435	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10773436	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10773445	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10773474	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10847452	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10847456	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11059356	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11059418	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11059504	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11059507	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2088678	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2088682	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2649912	0.82[ASN][1000 genomes]
rs531791	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61955029	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6489204	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7305589	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7309056	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7958805	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7959072	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7969474	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7972971	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:123163000-123167600	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr12:123164200-123171600	Weak transcription	Esophagus	oesophagus
3	chr12:123164200-123171800	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr12:123166400-123167400	Enhancers	Hela-S3	cervix
5	chr12:123166600-123167400	Enhancers	HepG2	liver
6	chr12:123166600-123175400	Weak transcription	Adipose Nuclei	Adipose
7	chr12:123166600-123187800	Weak transcription	A549	lung
8	chr12:123166800-123167600	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr12:123167000-123168000	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr12:123167000-123168800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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