Variant report

Variant	rs209182
Chromosome Location	chr6:28792338-28792339
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:28790715..28792614-chr6:28804190..28806792,2	K562	blood:
2	chr6:28783316..28785641-chr6:28791797..28793442,2	K562	blood:
3	chr6:28788096..28790497-chr6:28791295..28793656,2	K562	blood:
4	chr6:28792315..28794351-chr6:28951949..28954807,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000227214	Chromatin interaction
ENSG00000225173	Chromatin interaction
ENSG00000244349	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1002925	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1237485	0.82[EUR][1000 genomes]
rs169683	0.87[EUR][1000 genomes]
rs1794587	0.82[EUR][1000 genomes]
rs2032500	0.86[EUR][1000 genomes]
rs209122	0.84[EUR][1000 genomes]
rs209126	0.84[EUR][1000 genomes]
rs209128	0.84[EUR][1000 genomes]
rs209129	0.84[EUR][1000 genomes]
rs209137	0.84[EUR][1000 genomes]
rs209138	0.85[EUR][1000 genomes]
rs209148	0.86[EUR][1000 genomes]
rs209149	0.85[EUR][1000 genomes]
rs209152	0.83[EUR][1000 genomes]
rs209153	0.86[EUR][1000 genomes]
rs209160	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs209161	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs209163	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs209164	0.85[EUR][1000 genomes]
rs209169	0.82[EUR][1000 genomes]
rs209171	0.86[EUR][1000 genomes]
rs209173	0.87[EUR][1000 genomes]
rs209175	0.86[EUR][1000 genomes]
rs209176	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs209179	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs209184	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs209186	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2157312	0.81[EUR][1000 genomes]
rs2208536	0.87[EUR][1000 genomes]
rs2754764	0.87[EUR][1000 genomes]
rs2754767	0.87[EUR][1000 genomes]
rs2765218	0.86[EUR][1000 genomes]
rs2765219	0.87[EUR][1000 genomes]
rs3130841	0.82[EUR][1000 genomes]
rs3131102	0.82[EUR][1000 genomes]
rs3131342	0.87[EUR][1000 genomes]
rs3132371	0.83[EUR][1000 genomes]
rs3132386	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3135303	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3135315	0.84[EUR][1000 genomes]
rs3135328	0.80[EUR][1000 genomes]
rs377392	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs381808	0.84[EUR][1000 genomes]
rs386628	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs393431	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs526983	0.87[EUR][1000 genomes]
rs6456857	0.80[EUR][1000 genomes]
rs763009	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv883517	chr6:28751727-28802149	Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28791200-28794000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
2	chr6:28792200-28792400	Enhancers	K562	blood
3	chr6:28792200-28792800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
4	chr6:28792200-28793400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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