Variant report

Variant	rs2754764
Chromosome Location	chr6:28769011-28769012
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:28767356..28769263-chr6:28782865..28784537,2	K562	blood:
2	chr6:28761012..28764011-chr6:28768099..28770643,2	K562	blood:
3	chr6:28768996..28771268-chr6:28774440..28778213,3	K562	blood:
4	chr6:28761080..28764011-chr6:28767880..28769599,2	K562	blood:

Variant related genes	Relation type
ENSG00000265764	Chromatin interaction

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs1002925	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1233596	0.82[EUR][1000 genomes]
rs1233601	0.83[EUR][1000 genomes]
rs1233602	0.84[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1233607	0.82[EUR][1000 genomes]
rs1233615	0.83[EUR][1000 genomes]
rs1233616	0.83[EUR][1000 genomes]
rs1233617	0.82[EUR][1000 genomes]
rs1235176	0.82[EUR][1000 genomes]
rs1237485	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1476016	0.86[EUR][1000 genomes]
rs169683	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1794587	0.90[EUR][1000 genomes]
rs184093	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2032500	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2071790	0.86[EUR][1000 genomes]
rs209122	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs209126	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs209128	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs209129	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs209137	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs209138	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs209148	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs209149	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs209152	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs209153	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs209160	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs209161	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs209163	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs209164	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs209169	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs209171	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs209173	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs209175	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs209176	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs209179	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs209182	0.87[EUR][1000 genomes]
rs209184	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs209186	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2157312	0.84[EUR][1000 genomes]
rs2157313	0.86[EUR][1000 genomes]
rs2208536	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2754767	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2765218	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2765219	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2765229	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3129792	0.82[EUR][1000 genomes]
rs3130841	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3130842	0.86[EUR][1000 genomes]
rs3130886	0.84[EUR][1000 genomes]
rs3130889	0.86[EUR][1000 genomes]
rs3130897	0.86[EUR][1000 genomes]
rs3131070	0.86[EUR][1000 genomes]
rs3131074	0.86[EUR][1000 genomes]
rs3131077	0.85[EUR][1000 genomes]
rs3131102	0.89[EUR][1000 genomes]
rs3131342	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3132371	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3132386	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3135303	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3135315	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3135321	0.82[EUR][1000 genomes]
rs3135322	0.84[EUR][1000 genomes]
rs3135323	0.85[EUR][1000 genomes]
rs3135324	0.85[EUR][1000 genomes]
rs3135327	0.82[EUR][1000 genomes]
rs3135328	0.86[EUR][1000 genomes]
rs377392	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs381808	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs386628	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs393431	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs526983	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6456857	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs763009	0.83[EUR][1000 genomes]
rs9257134	0.81[EUR][1000 genomes]
rs9257135	0.81[EUR][1000 genomes]
rs9257229	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv883517	chr6:28751727-28802149	Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv3384463	chr6:28759027-28776259	Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv2621756	chr6:28762692-28779791	Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv2322180	chr6:28764675-28780578	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28763400-28770600	Weak transcription	HMEC	breast
2	chr6:28764600-28770400	Weak transcription	GM12878-XiMat	blood
3	chr6:28765000-28769600	Weak transcription	K562	blood

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