Variant report

Variant	rs9257229
Chromosome Location	chr6:28790397-28790398
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1002925	0.85[EUR][1000 genomes]
rs169683	0.87[EUR][1000 genomes]
rs2032500	0.81[EUR][1000 genomes]
rs209148	0.81[EUR][1000 genomes]
rs209149	0.80[EUR][1000 genomes]
rs209152	0.84[EUR][1000 genomes]
rs209153	0.81[EUR][1000 genomes]
rs209161	0.83[EUR][1000 genomes]
rs209163	0.83[EUR][1000 genomes]
rs209164	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs209169	0.82[EUR][1000 genomes]
rs209171	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs209173	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs209175	0.81[EUR][1000 genomes]
rs209176	0.85[EUR][1000 genomes]
rs209179	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs209184	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs209186	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2208536	0.86[EUR][1000 genomes]
rs2754764	0.87[EUR][1000 genomes]
rs2754767	0.87[EUR][1000 genomes]
rs2765218	0.86[EUR][1000 genomes]
rs2765219	0.87[EUR][1000 genomes]
rs2765229	0.80[EUR][1000 genomes]
rs3131342	0.87[EUR][1000 genomes]
rs3132371	0.88[EUR][1000 genomes]
rs3132386	0.85[EUR][1000 genomes]
rs3135303	0.83[EUR][1000 genomes]
rs377392	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs381808	0.81[EUR][1000 genomes]
rs386628	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs393431	0.85[EUR][1000 genomes]
rs526983	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv883517	chr6:28751727-28802149	Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28786000-28792200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:28786400-28791000	Weak transcription	A549	lung
3	chr6:28786400-28791200	Weak transcription	K562	blood
4	chr6:28790000-28790800	Active TSS	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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