Variant report

Variant	rs526983
Chromosome Location	chr6:28815213-28815214
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:28813757..28815846-chr6:28996750..28999328,2	K562	blood:
2	chr6:28812715..28815371-chr6:28900325..28902409,2	K562	blood:
3	chr6:28805414..28809605-chr6:28812937..28815544,4	K562	blood:
4	chr6:28809293..28810970-chr6:28814683..28816407,2	MCF-7	breast:
5	chr6:28813757..28815980-chr6:28886210..28888763,2	K562	blood:
6	chr6:28815053..28817118-chr6:28890667..28892873,2	MCF-7	breast:
7	chr6:28813316..28816057-chr6:28863123..28865503,2	K562	blood:
8	chr6:28813316..28815860-chr6:28863123..28865015,2	K562	blood:
9	chr6:28812954..28815391-chr6:28833633..28835184,2	MCF-7	breast:
10	chr6:28815066..28816619-chr6:28970293..28972861,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000225173	Chromatin interaction
ENSG00000204713	Chromatin interaction
ENSG00000224157	Chromatin interaction

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs1002925	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1233601	0.83[EUR][1000 genomes]
rs1233602	0.84[EUR][1000 genomes]
rs1233607	0.83[EUR][1000 genomes]
rs1233615	0.84[EUR][1000 genomes]
rs1233616	0.84[EUR][1000 genomes]
rs1233617	0.83[EUR][1000 genomes]
rs1237485	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1476016	0.86[EUR][1000 genomes]
rs169683	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1794587	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs184093	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2032500	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2071790	0.86[EUR][1000 genomes]
rs209122	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs209126	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs209128	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs209129	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs209137	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs209138	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs209148	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs209149	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs209152	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs209153	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs209160	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs209161	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs209163	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs209164	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs209169	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs209171	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs209173	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs209175	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs209176	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs209179	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs209182	0.87[EUR][1000 genomes]
rs209184	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs209186	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2157312	0.83[EUR][1000 genomes]
rs2157313	0.85[EUR][1000 genomes]
rs2208536	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2754764	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2754767	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2765218	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2765219	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2765229	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3130841	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3130842	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3130886	0.81[EUR][1000 genomes]
rs3130889	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3130897	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3131070	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3131074	0.86[EUR][1000 genomes]
rs3131077	0.85[EUR][1000 genomes]
rs3131102	0.89[EUR][1000 genomes]
rs3131342	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3132371	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3132386	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3135303	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3135315	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3135322	0.82[EUR][1000 genomes]
rs3135323	0.85[EUR][1000 genomes]
rs3135324	0.85[EUR][1000 genomes]
rs3135327	0.82[EUR][1000 genomes]
rs3135328	0.86[EUR][1000 genomes]
rs377392	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs381808	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs386628	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs393431	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6456857	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs763009	0.83[EUR][1000 genomes]
rs7755875	0.81[ASN][1000 genomes]
rs9257229	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv883518	chr6:28792477-28911802	Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases
3	nsv883519	chr6:28792477-28936556	Transcr. at gene 5' and 3' Genic enhancers Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
4	esv3403240	chr6:28808022-28832799	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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