Variant report

Variant	rs7755875
Chromosome Location	chr6:28854059-28854060
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:28852918..28854862-chr6:28890133..28892224,2	K562	blood:
2	chr6:28847771..28851189-chr6:28852484..28857224,5	MCF-7	breast:
3	chr6:28853392..28856962-chr6:28946124..28948045,3	K562	blood:

Variant related genes	Relation type
ENSG00000204713	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1002925	0.81[ASN][1000 genomes]
rs1237485	0.87[ASN][1000 genomes]
rs1794587	0.85[ASN][1000 genomes]
rs184093	0.89[ASN][1000 genomes]
rs2032500	0.90[ASN][1000 genomes]
rs2071785	0.81[ASN][1000 genomes]
rs209122	0.87[ASN][1000 genomes]
rs209126	0.88[ASN][1000 genomes]
rs209128	0.89[ASN][1000 genomes]
rs209129	0.89[ASN][1000 genomes]
rs209137	0.87[ASN][1000 genomes]
rs209148	0.90[ASN][1000 genomes]
rs209149	0.89[ASN][1000 genomes]
rs209152	0.84[ASN][1000 genomes]
rs209153	0.84[ASN][1000 genomes]
rs209160	0.84[ASN][1000 genomes]
rs209161	0.84[ASN][1000 genomes]
rs209163	0.84[ASN][1000 genomes]
rs209164	0.85[ASN][1000 genomes]
rs209173	0.82[ASN][1000 genomes]
rs209176	0.81[ASN][1000 genomes]
rs2157312	0.80[ASN][1000 genomes]
rs2157313	0.80[ASN][1000 genomes]
rs2187807	0.80[ASN][1000 genomes]
rs2187808	0.80[ASN][1000 genomes]
rs2765229	0.87[ASN][1000 genomes]
rs3130841	0.87[ASN][1000 genomes]
rs3130842	0.82[ASN][1000 genomes]
rs3130889	0.80[ASN][1000 genomes]
rs3130897	0.81[ASN][1000 genomes]
rs3131070	0.82[ASN][1000 genomes]
rs3131074	0.80[ASN][1000 genomes]
rs3131077	0.80[ASN][1000 genomes]
rs3132386	0.81[ASN][1000 genomes]
rs3135303	0.84[ASN][1000 genomes]
rs3135315	0.83[ASN][1000 genomes]
rs3135328	0.80[ASN][1000 genomes]
rs381808	0.90[ASN][1000 genomes]
rs393431	0.84[ASN][1000 genomes]
rs4713186	0.82[ASN][1000 genomes]
rs4713187	0.80[ASN][1000 genomes]
rs4713188	0.82[ASN][1000 genomes]
rs526983	0.81[ASN][1000 genomes]
rs6456876	0.80[ASN][1000 genomes]
rs6901599	0.80[ASN][1000 genomes]
rs6914955	0.81[ASN][1000 genomes]
rs9257405	0.82[ASN][1000 genomes]
rs9257421	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883518	chr6:28792477-28911802	Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases
2	nsv883519	chr6:28792477-28936556	Transcr. at gene 5' and 3' Genic enhancers Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
3	nsv427748	chr6:28831888-28999434	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
4	nsv601212	chr6:28833225-28893927	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
5	nsv462667	chr6:28834646-28893927	Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28849400-28863000	Weak transcription	Right Atrium	heart
2	chr6:28852400-28854200	ZNF genes & repeats	Fetal Thymus	thymus
3	chr6:28853000-28854200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr6:28853000-28854200	Enhancers	Dnd41	blood
5	chr6:28853200-28854200	Enhancers	Primary T cells fromperipheralblood	blood
6	chr6:28853200-28854200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr6:28853400-28854200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
8	chr6:28853400-28854200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr6:28853400-28863000	Weak transcription	Fetal Kidney	kidney
10	chr6:28853600-28854200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr6:28853800-28854200	Enhancers	Thymus	Thymus
12	chr6:28853800-28854400	ZNF genes & repeats	K562	blood
13	chr6:28854000-28854200	Active TSS	HepG2	liver
14	chr6:28854000-28854400	Enhancers	Primary T helper naive cells from peripheral blood	blood

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