Variant report

Variant	rs9257134
Chromosome Location	chr6:28723426-28723427
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:28695559..28699343-chr6:28721391..28727067,6	K562	blood:
2	chr6:28685640..28691299-chr6:28719887..28724041,7	K562	blood:
3	chr6:28723357..28725477-chr6:28861527..28864312,2	K562	blood:
4	chr6:28722382..28725655-chr6:28783034..28786428,3	K562	blood:
5	chr6:28721787..28724398-chr9:131939083..131940744,2	MCF-7	breast:
6	chr6:28706832..28708574-chr6:28723413..28725632,2	K562	blood:
7	chr6:28695145..28698066-chr6:28723238..28727067,5	K562	blood:
8	chr6:28722382..28724843-chr6:28784005..28786428,2	K562	blood:
9	chr6:28652217..28653747-chr6:28722642..28724791,2	K562	blood:
10	chr6:28723125..28726078-chr6:28775767..28777359,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000188483	Chromatin interaction
ENSG00000224157	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1002925	0.81[EUR][1000 genomes]
rs10456364	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10456365	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1233572	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1233575	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1233576	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1233577	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1233584	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1233586	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1233592	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1233596	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1233601	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1233602	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1233605	0.83[ASN][1000 genomes]
rs1233607	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1233615	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1233616	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1233617	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1235176	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1539585	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs169683	0.81[EUR][1000 genomes]
rs1742742	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs209176	0.81[EUR][1000 genomes]
rs209184	0.81[EUR][1000 genomes]
rs209186	0.80[EUR][1000 genomes]
rs2208536	0.81[EUR][1000 genomes]
rs2394152	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2754764	0.81[EUR][1000 genomes]
rs2754767	0.81[EUR][1000 genomes]
rs2765218	0.80[EUR][1000 genomes]
rs2765219	0.81[EUR][1000 genomes]
rs3131342	0.81[EUR][1000 genomes]
rs3132386	0.81[EUR][1000 genomes]
rs377392	0.81[EUR][1000 genomes]
rs386628	0.81[EUR][1000 genomes]
rs393431	0.81[EUR][1000 genomes]
rs4713178	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7772289	0.86[EUR][1000 genomes]
rs9257135	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9348813	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9366725	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9391676	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9404960	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28715400-28725000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:28715600-28724800	Weak transcription	HMEC	breast
3	chr6:28718800-28724600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr6:28721000-28723800	Weak transcription	A549	lung
5	chr6:28721000-28723800	Weak transcription	Hela-S3	cervix
6	chr6:28721800-28724000	Weak transcription	Placenta	Placenta
7	chr6:28723200-28723600	Enhancers	K562	blood

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