Variant report
| Variant | rs7772289 |
|---|---|
| Chromosome Location | chr6:28674322-28674323 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:27859524..27861872-chr6:28672983..28674513,2 | K562 | blood: | |
| 2 | chr6:28673080..28675380-chr6:28676170..28678591,4 | K562 | blood: | |
| 3 | chr6:28674230..28679862-chr6:28680075..28684685,7 | K562 | blood: | |
| 4 | chr6:28664889..28672891-chr6:28674189..28678694,12 | K562 | blood: | |
| 5 | chr6:28673375..28676258-chr6:28747112..28749974,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000197153 | Chromatin interaction |
| ENSG00000233224 | Chromatin interaction |
| ENSG00000196331 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10456364 | 0.85[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs10456365 | 0.92[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1233572 | 0.90[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs1233575 | 0.90[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs1233576 | 0.92[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs1233577 | 0.86[EUR][1000 genomes] |
| rs1233584 | 0.93[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs1233586 | 0.83[EUR][1000 genomes] |
| rs1233596 | 0.86[EUR][1000 genomes] |
| rs1233601 | 0.81[EUR][1000 genomes] |
| rs1233607 | 0.81[EUR][1000 genomes] |
| rs1233615 | 0.82[EUR][1000 genomes] |
| rs1233616 | 0.82[EUR][1000 genomes] |
| rs1233617 | 0.81[EUR][1000 genomes] |
| rs1235176 | 0.86[EUR][1000 genomes] |
| rs1539585 | 0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1742742 | 0.83[EUR][1000 genomes] |
| rs2394152 | 0.92[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs4713178 | 0.90[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs9257134 | 0.86[EUR][1000 genomes] |
| rs9257135 | 0.86[EUR][1000 genomes] |
| rs9348813 | 0.91[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs9366725 | 0.92[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs9391676 | 0.90[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs9404960 | 0.91[EUR][1000 genomes];0.95[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830621 | chr6:28473951-28675709 | Bivalent/Poised TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 30 gene(s) | inside rSNPs | diseases |
| 2 | nsv1031671 | chr6:28575172-28678126 | Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| 3 | nsv534089 | chr6:28636972-28841640 | Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 43 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:28668600-28676400 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |
| 2 | chr6:28671800-28674600 | Weak transcription | K562 | blood |
