Variant report

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:28685695..28690739-chr6:28709794..28719692,17	K562	blood:
2	chr6:28187375..28189818-chr6:28709219..28712133,2	K562	blood:
3	chr6:28709118..28711959-chr6:28883965..28885709,2	K562	blood:
4	chr6:28677024..28680294-chr6:28708371..28711108,3	K562	blood:
5	chr6:28706088..28707933-chr6:28709707..28711699,2	MCF-7	breast:
6	chr6:28708828..28711796-chr6:28725533..28729587,4	K562	blood:
7	chr6:28709763..28712235-chr6:28715610..28717205,2	K562	blood:
8	chr6:28709319..28711119-chr6:28746197..28748161,2	K562	blood:
9	chr6:28706840..28708346-chr6:28709488..28712383,2	MCF-7	breast:
10	chr6:28703036..28704771-chr6:28709650..28711944,2	MCF-7	breast:

No data

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10456364	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10456365	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1233572	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1233575	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1233576	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1233584	0.88[EUR][1000 genomes]
rs1233586	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1233592	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1233596	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1233602	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1235176	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1539585	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2394152	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4713178	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7772289	0.86[EUR][1000 genomes]
rs9257134	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9257135	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9348813	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9366725	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9391676	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9404960	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28705600-28710400	Weak transcription	A549	lung
2	chr6:28707000-28710400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr6:28707000-28711000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:28707000-28711000	Weak transcription	HMEC	breast
5	chr6:28710000-28710400	Enhancers	K562	blood
6	chr6:28710200-28711200	Active TSS	H1 Cell Line	embryonic stem cell
7	chr6:28710200-28711400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr6:28710200-28711600	Active TSS	HUES6 Cell Line	embryonic stem cell
9	chr6:28710200-28711800	Active TSS	H9 Cell Line	embryonic stem cell

Quick Search: