Variant report
Variant | rs4713178 |
---|---|
Chromosome Location | chr6:28690100-28690101 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:12)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:12 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr6:28686790..28690321-chr6:28972014..28975051,3 | K562 | blood: | |
2 | chr6:28688964..28691307-chr6:28783200..28785150,2 | K562 | blood: | |
3 | chr6:28688275..28691006-chr6:28830286..28833046,2 | K562 | blood: | |
4 | chr6:28688047..28690834-chr6:28847432..28849865,2 | K562 | blood: | |
5 | chr6:28685695..28690739-chr6:28709794..28719692,17 | K562 | blood: | |
6 | chr6:28685640..28691299-chr6:28719887..28724041,7 | K562 | blood: | |
7 | chr6:28687184..28690282-chr6:28725684..28728661,4 | K562 | blood: | |
8 | chr6:27797995..27799606-chr6:28688387..28690532,2 | K562 | blood: | |
9 | chr6:28579298..28581830-chr6:28687615..28690190,2 | K562 | blood: | |
10 | chr6:28689073..28690596-chr6:28736279..28738758,2 | K562 | blood: | |
11 | chr6:28579345..28581830-chr6:28688286..28691469,3 | K562 | blood: | |
12 | chr6:28655903..28659289-chr6:28687482..28691877,5 | K562 | blood: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000197914 | Chromatin interaction |
ENSG00000197935 | Chromatin interaction |
ENSG00000225595 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs10456364 | 0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs10456365 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs1233572 | 0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs1233575 | 0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs1233576 | 0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs1233577 | 0.91[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs1233584 | 0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs1233586 | 0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs1233592 | 0.86[AMR][1000 genomes];0.83[EUR][1000 genomes] |
rs1233596 | 0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs1233602 | 0.85[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs1235176 | 0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs1539585 | 0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs1742742 | 0.81[EUR][1000 genomes] |
rs2394149 | 0.80[AFR][1000 genomes] |
rs2394152 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7772289 | 0.90[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs9257134 | 0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs9257135 | 0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs9348813 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs9366725 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9391676 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9404960 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv534089 | chr6:28636972-28841640 | Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 43 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr6:28689400-28692200 | Weak transcription | K562 | blood |
2 | chr6:28689800-28693000 | Weak transcription | HepG2 | liver |