Variant report

Variant	rs1233584
Chromosome Location	chr6:28715604-28715605
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:28685695..28690739-chr6:28709794..28719692,17	K562	blood:
2	chr6:28690957..28693592-chr6:28715532..28717190,2	K562	blood:
3	chr6:28715243..28717665-chr6:28720660..28723020,3	MCF-7	breast:
4	chr6:28675937..28678436-chr6:28714378..28717969,3	K562	blood:
5	chr6:27560152..27562900-chr6:28715549..28717321,2	K562	blood:
6	chr6:28715456..28717340-chr6:28801713..28804501,2	K562	blood:
7	chr6:28715045..28717732-chr6:28737419..28740778,4	K562	blood:
8	chr6:28638654..28641368-chr6:28714122..28716293,2	K562	blood:
9	chr6:28712043..28717130-chr6:28723838..28729658,8	K562	blood:

No data

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10456364	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10456365	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1233572	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1233575	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1233576	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1233577	0.88[EUR][1000 genomes]
rs1233586	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1233592	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1233596	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1233601	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1233602	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1233605	0.82[ASN][1000 genomes]
rs1233607	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1233615	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1233616	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1233617	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1235176	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1539585	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1742742	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2394152	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4713178	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7772289	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9257134	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9257135	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9348813	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9366725	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9391676	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9404960	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28714400-28716200	Active TSS	A549	lung
2	chr6:28714600-28716000	Active TSS	K562	blood
3	chr6:28714800-28716000	Active TSS	H9 Cell Line	embryonic stem cell
4	chr6:28714800-28716000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
5	chr6:28714800-28716000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
6	chr6:28714800-28716000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
7	chr6:28714800-28716000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
8	chr6:28714800-28716000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr6:28714800-28716200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr6:28714800-28716200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr6:28715000-28715800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
12	chr6:28715000-28715800	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr6:28715000-28715800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
14	chr6:28715000-28715800	Flanking Bivalent TSS/Enh	HepG2	liver
15	chr6:28715000-28716000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr6:28715000-28716200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr6:28715200-28715800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:28715200-28715800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr6:28715200-28716000	Active TSS	H1 Cell Line	embryonic stem cell
20	chr6:28715200-28716000	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
21	chr6:28715200-28716200	Active TSS	Hela-S3	cervix
22	chr6:28715400-28715800	Active TSS	NHEK	skin
23	chr6:28715400-28716000	Active TSS	ES-I3 Cell Line	embryonic stem cell
24	chr6:28715400-28716000	Active TSS	HUES6 Cell Line	embryonic stem cell
25	chr6:28715400-28716400	Active TSS	HUES48 Cell Line	embryonic stem cell
26	chr6:28715400-28725000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr6:28715600-28715800	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr6:28715600-28715800	Bivalent Enhancer	Left Ventricle	heart
29	chr6:28715600-28716000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr6:28715600-28724800	Weak transcription	HMEC	breast

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