Variant report

Variant	rs1233575
Chromosome Location	chr6:28709895-28709896
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:28685695..28690739-chr6:28709794..28719692,17	K562	blood:
2	chr6:28187375..28189818-chr6:28709219..28712133,2	K562	blood:
3	chr6:28709118..28711959-chr6:28883965..28885709,2	K562	blood:
4	chr6:28677024..28680294-chr6:28708371..28711108,3	K562	blood:
5	chr6:28706088..28707933-chr6:28709707..28711699,2	MCF-7	breast:
6	chr6:28708828..28711796-chr6:28725533..28729587,4	K562	blood:
7	chr6:28709763..28712235-chr6:28715610..28717205,2	K562	blood:
8	chr6:28709319..28711119-chr6:28746197..28748161,2	K562	blood:
9	chr6:28706840..28708346-chr6:28709488..28712383,2	MCF-7	breast:
10	chr6:28703036..28704771-chr6:28709650..28711944,2	MCF-7	breast:

No data

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10456364	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10456365	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1233572	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1233576	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1233577	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1233584	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1233586	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1233592	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1233596	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1233601	0.80[EUR][1000 genomes]
rs1233602	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1233615	0.81[EUR][1000 genomes]
rs1233616	0.81[EUR][1000 genomes]
rs1235176	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1539585	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1742742	0.82[EUR][1000 genomes]
rs2394152	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4713178	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7772289	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9257134	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9257135	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9348813	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9366725	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9391676	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9404960	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28705600-28710400	Weak transcription	A549	lung
2	chr6:28707000-28710400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr6:28707000-28711000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:28707000-28711000	Weak transcription	HMEC	breast
5	chr6:28709800-28710000	Flanking Active TSS	K562	blood
6	chr6:28709800-28710200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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