Variant report

Variant	rs2095633
Chromosome Location	chr6:79916873-79916874
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:79913005..79914594-chr6:79916746..79918687,2	K562	blood:

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs10455359	0.92[EUR][1000 genomes]
rs10806163	0.94[EUR][1000 genomes]
rs11965180	0.89[EUR][1000 genomes]
rs11966786	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11969279	0.89[EUR][1000 genomes]
rs12194892	0.94[EUR][1000 genomes]
rs12209677	0.94[EUR][1000 genomes]
rs1335535	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1335537	0.92[EUR][1000 genomes]
rs1335538	0.92[EUR][1000 genomes]
rs1414279	0.94[EUR][1000 genomes]
rs1414283	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1414284	0.92[EUR][1000 genomes]
rs1537739	0.89[EUR][1000 genomes]
rs1537740	0.92[EUR][1000 genomes]
rs1582079	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16890450	0.94[EUR][1000 genomes]
rs1832088	0.92[EUR][1000 genomes]
rs1832089	0.92[EUR][1000 genomes]
rs1889685	0.89[EUR][1000 genomes]
rs2322216	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2322219	0.89[EUR][1000 genomes]
rs2874732	0.92[EUR][1000 genomes]
rs2874733	0.92[EUR][1000 genomes]
rs3934335	0.92[EUR][1000 genomes]
rs4112504	0.92[EUR][1000 genomes]
rs4235810	0.89[EUR][1000 genomes]
rs4301272	0.89[EUR][1000 genomes]
rs4377755	0.92[EUR][1000 genomes]
rs4407672	0.92[EUR][1000 genomes]
rs4418150	0.89[EUR][1000 genomes]
rs4432946	0.89[EUR][1000 genomes]
rs4464749	0.92[EUR][1000 genomes]
rs4470813	0.92[EUR][1000 genomes]
rs4537102	0.89[EUR][1000 genomes]
rs4555887	0.89[EUR][1000 genomes]
rs4706754	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4706755	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4706756	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4706759	0.82[EUR][1000 genomes]
rs4706760	0.92[EUR][1000 genomes]
rs4706765	0.92[EUR][1000 genomes]
rs4706766	0.92[EUR][1000 genomes]
rs55635444	0.92[EUR][1000 genomes]
rs56183421	0.89[EUR][1000 genomes]
rs56193084	0.94[EUR][1000 genomes]
rs56354335	0.94[EUR][1000 genomes]
rs56955811	0.94[EUR][1000 genomes]
rs57340384	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs57608966	0.94[EUR][1000 genomes]
rs59152048	0.92[EUR][1000 genomes]
rs59858042	0.92[EUR][1000 genomes]
rs61227507	0.92[EUR][1000 genomes]
rs61558200	0.94[EUR][1000 genomes]
rs62411290	0.92[EUR][1000 genomes]
rs6454106	0.92[EUR][1000 genomes]
rs6907042	0.92[EUR][1000 genomes]
rs6907264	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6913297	0.89[EUR][1000 genomes]
rs6917165	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6924790	0.92[EUR][1000 genomes]
rs6929660	0.89[EUR][1000 genomes]
rs6941433	0.92[EUR][1000 genomes]
rs73468020	0.97[EUR][1000 genomes]
rs73468035	0.94[EUR][1000 genomes]
rs73767530	0.94[EUR][1000 genomes]
rs7738508	0.92[EUR][1000 genomes]
rs7739118	0.89[EUR][1000 genomes]
rs7746915	0.92[EUR][1000 genomes]
rs7751974	0.92[EUR][1000 genomes]
rs7752593	0.92[EUR][1000 genomes]
rs7757062	0.89[EUR][1000 genomes]
rs7760458	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7760939	0.89[EUR][1000 genomes]
rs7763232	0.92[EUR][1000 genomes]
rs7764517	0.92[EUR][1000 genomes]
rs7770245	0.92[EUR][1000 genomes]
rs7772967	0.92[EUR][1000 genomes]
rs9343886	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9343890	0.87[EUR][1000 genomes]
rs9350803	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9352710	0.92[EUR][1000 genomes]
rs9359369	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9361504	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9361511	0.92[EUR][1000 genomes]
rs9443654	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830706	chr6:79825910-79994878	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1028607	chr6:79853272-80767716	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79883000-79925000	Weak transcription	Pancreas	Pancrea
2	chr6:79899200-79924800	Weak transcription	Psoas Muscle	Psoas
3	chr6:79899800-79924400	Weak transcription	Brain Anterior Caudate	brain
4	chr6:79901200-79927000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr6:79902200-79917200	Weak transcription	Fetal Brain Male	brain
6	chr6:79902400-79919600	Weak transcription	Aorta	Aorta
7	chr6:79904200-79925000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:79906800-79935600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr6:79907000-79924800	Weak transcription	NH-A	brain
10	chr6:79907200-79926000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr6:79907400-79942800	Weak transcription	HSMM	muscle
12	chr6:79907600-79924400	Weak transcription	Colon Smooth Muscle	Colon
13	chr6:79907600-79940800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr6:79908400-79924800	Weak transcription	Fetal Heart	heart
15	chr6:79908400-79938600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr6:79909000-79917400	Weak transcription	Hela-S3	cervix
17	chr6:79909600-79918400	Strong transcription	HUES6 Cell Line	embryonic stem cell
18	chr6:79909800-79921000	Strong transcription	HUES64 Cell Line	embryonic stem cell
19	chr6:79910200-79917800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr6:79910200-79919200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr6:79910200-79919400	Weak transcription	HSMMtube	muscle
22	chr6:79910200-79924400	Weak transcription	Brain Angular Gyrus	brain
23	chr6:79910200-79925000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr6:79910400-79920000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr6:79910600-79921800	Weak transcription	Colonic Mucosa	Colon
26	chr6:79910800-79924600	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr6:79910800-79935600	Weak transcription	NHEK	skin
28	chr6:79911000-79917400	Strong transcription	Adipose Nuclei	Adipose
29	chr6:79911000-79928800	Weak transcription	Brain Substantia Nigra	brain
30	chr6:79911400-79918200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr6:79911600-79917800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
32	chr6:79911600-79920400	Strong transcription	Dnd41	blood
33	chr6:79911600-79920800	Strong transcription	Fetal Thymus	thymus
34	chr6:79911800-79918000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr6:79911800-79918200	Strong transcription	Fetal Muscle Leg	muscle
36	chr6:79911800-79920600	Strong transcription	Primary T cells from cord blood	blood
37	chr6:79912000-79921600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
38	chr6:79912200-79924800	Weak transcription	Small Intestine	intestine
39	chr6:79912400-79918200	Strong transcription	Fetal Intestine Large	intestine
40	chr6:79912400-79919600	Weak transcription	Right Atrium	heart
41	chr6:79912400-79940600	Weak transcription	Primary T helper cells PMA-I stimulated	--
42	chr6:79912600-79919800	Weak transcription	Fetal Kidney	kidney
43	chr6:79912600-79925000	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr6:79912600-79927600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
45	chr6:79912600-79931000	Weak transcription	Rectal Smooth Muscle	rectum
46	chr6:79912800-79922000	Weak transcription	Rectal Mucosa Donor 31	rectum
47	chr6:79912800-79924800	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr6:79912800-79926600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr6:79912800-79942600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr6:79913000-79917400	Weak transcription	Primary B cells from peripheral blood	blood

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