Variant report

Variant	rs6907264
Chromosome Location	chr6:79929548-79929549
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:79928008..79932435-chr6:79941475..79945264,5	K562	blood:
2	chr6:79922096..79924489-chr6:79928328..79930333,2	K562	blood:
3	chr6:79927796..79930108-chr6:79949418..79951893,2	K562	blood:
4	chr6:79927857..79931747-chr6:79940094..79945264,7	K562	blood:

Variant related genes	Relation type
ENSG00000118418	Chromatin interaction
ENSG00000270362	Chromatin interaction

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs10455359	0.92[EUR][1000 genomes]
rs10806163	0.94[EUR][1000 genomes]
rs11965180	0.89[EUR][1000 genomes]
rs11966786	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11969279	0.89[EUR][1000 genomes]
rs12194892	0.94[EUR][1000 genomes]
rs12209677	0.94[EUR][1000 genomes]
rs1335535	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs1335537	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs1335538	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs1414278	0.91[AFR][1000 genomes]
rs1414279	0.94[EUR][1000 genomes]
rs1414283	1.00[CEU][hapmap];0.94[YRI][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1414284	0.92[EUR][1000 genomes]
rs1537739	0.89[EUR][1000 genomes]
rs1537740	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs1582079	1.00[CEU][hapmap];0.94[YRI][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16890450	0.94[EUR][1000 genomes]
rs1832088	0.92[EUR][1000 genomes]
rs1832089	0.92[EUR][1000 genomes]
rs1889685	0.89[EUR][1000 genomes]
rs2095633	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2322216	1.00[CEU][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2322219	0.89[EUR][1000 genomes]
rs2874732	0.92[EUR][1000 genomes]
rs2874733	0.92[EUR][1000 genomes]
rs3934335	0.92[EUR][1000 genomes]
rs4112504	0.92[EUR][1000 genomes]
rs4235810	0.89[EUR][1000 genomes]
rs4301272	0.89[EUR][1000 genomes]
rs4377755	0.92[EUR][1000 genomes]
rs4407672	0.92[EUR][1000 genomes]
rs4418150	0.85[CEU][hapmap];0.89[EUR][1000 genomes]
rs4432946	0.89[EUR][1000 genomes]
rs4464749	0.92[EUR][1000 genomes]
rs4470813	0.92[EUR][1000 genomes]
rs4537102	0.89[EUR][1000 genomes]
rs4555887	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs4706754	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4706755	1.00[CEU][hapmap];0.90[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4706756	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4706759	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs4706760	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs4706765	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs4706766	0.92[EUR][1000 genomes]
rs55635444	0.92[EUR][1000 genomes]
rs56183421	0.89[EUR][1000 genomes]
rs56193084	0.94[EUR][1000 genomes]
rs56354335	0.94[EUR][1000 genomes]
rs56955811	0.94[EUR][1000 genomes]
rs57340384	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs57608966	0.94[EUR][1000 genomes]
rs59152048	0.92[EUR][1000 genomes]
rs59858042	0.92[EUR][1000 genomes]
rs61227507	0.92[EUR][1000 genomes]
rs61558200	0.94[EUR][1000 genomes]
rs62411290	0.92[EUR][1000 genomes]
rs6454106	0.92[EUR][1000 genomes]
rs6907042	0.92[EUR][1000 genomes]
rs6913297	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs6917165	1.00[CEU][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6924790	0.92[EUR][1000 genomes]
rs6929660	0.89[EUR][1000 genomes]
rs6941433	0.92[EUR][1000 genomes]
rs73468020	0.97[EUR][1000 genomes]
rs73468035	0.94[EUR][1000 genomes]
rs73767530	0.94[EUR][1000 genomes]
rs7738508	0.92[EUR][1000 genomes]
rs7739118	0.89[EUR][1000 genomes]
rs7746915	0.92[EUR][1000 genomes]
rs7751974	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs7752593	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs7757062	0.89[EUR][1000 genomes]
rs7760458	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7760939	0.89[EUR][1000 genomes]
rs7763232	0.92[EUR][1000 genomes]
rs7764517	0.92[EUR][1000 genomes]
rs7770245	0.92[EUR][1000 genomes]
rs7772967	0.92[EUR][1000 genomes]
rs9341761	1.00[YRI][hapmap]
rs9343886	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9343890	0.87[EUR][1000 genomes]
rs9350803	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9352710	0.92[EUR][1000 genomes]
rs9359369	1.00[CEU][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9361504	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9361511	0.92[EUR][1000 genomes]
rs9443654	1.00[CEU][hapmap];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830706	chr6:79825910-79994878	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1028607	chr6:79853272-80767716	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79906800-79935600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr6:79907400-79942800	Weak transcription	HSMM	muscle
3	chr6:79907600-79940800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr6:79908400-79938600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr6:79910800-79935600	Weak transcription	NHEK	skin
6	chr6:79912400-79940600	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr6:79912600-79931000	Weak transcription	Rectal Smooth Muscle	rectum
8	chr6:79912800-79942600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr6:79913200-79943000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr6:79913200-79943200	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr6:79916400-79930400	Weak transcription	Brain Germinal Matrix	brain
12	chr6:79916400-79935400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr6:79916400-79943200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr6:79916600-79933000	Weak transcription	Spleen	Spleen
15	chr6:79917800-79929600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr6:79917800-79941000	Weak transcription	Hela-S3	cervix
17	chr6:79918200-79942000	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr6:79920200-79933400	Weak transcription	Primary hematopoietic stem cells	blood
19	chr6:79920400-79940600	Weak transcription	Dnd41	blood
20	chr6:79920400-79943000	Weak transcription	Fetal Muscle Trunk	muscle
21	chr6:79920600-79931400	Weak transcription	Aorta	Aorta
22	chr6:79920800-79939200	Weak transcription	Fetal Thymus	thymus
23	chr6:79921600-79933000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr6:79924800-79929800	Enhancers	HUES64 Cell Line	embryonic stem cell
25	chr6:79925000-79933600	Weak transcription	Primary B cells from cord blood	blood
26	chr6:79925000-79935400	Weak transcription	Fetal Kidney	kidney
27	chr6:79925200-79939600	Weak transcription	Fetal Brain Male	brain
28	chr6:79925400-79931000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr6:79925400-79931000	Weak transcription	Left Ventricle	heart
30	chr6:79925400-79931400	Weak transcription	Gastric	stomach
31	chr6:79925400-79933000	Weak transcription	Fetal Intestine Large	intestine
32	chr6:79925400-79933200	Weak transcription	Pancreas	Pancrea
33	chr6:79925400-79933400	Weak transcription	HepG2	liver
34	chr6:79925400-79936000	Weak transcription	Fetal Muscle Leg	muscle
35	chr6:79925400-79939600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr6:79925400-79940000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr6:79925400-79940600	Weak transcription	Placenta	Placenta
38	chr6:79925400-79942600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
39	chr6:79925800-79931400	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr6:79925800-79932200	Weak transcription	Duodenum Mucosa	Duodenum
41	chr6:79925800-79934200	Weak transcription	Fetal Lung	lung
42	chr6:79925800-79940600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr6:79925800-79941800	Weak transcription	Brain Angular Gyrus	brain
44	chr6:79925800-79942000	Weak transcription	Adipose Nuclei	Adipose
45	chr6:79925800-79942000	Weak transcription	Brain Anterior Caudate	brain
46	chr6:79925800-79942800	Weak transcription	Liver	Liver
47	chr6:79926600-79933400	Weak transcription	Fetal Intestine Small	intestine
48	chr6:79926600-79935400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr6:79926600-79942000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr6:79927200-79939800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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