Variant report

Variant	rs9343886
Chromosome Location	chr6:79927081-79927082
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs10455359	0.92[EUR][1000 genomes]
rs10806163	0.94[EUR][1000 genomes]
rs11965180	0.89[EUR][1000 genomes]
rs11966786	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11969279	0.89[EUR][1000 genomes]
rs12194892	0.94[EUR][1000 genomes]
rs12209677	0.94[EUR][1000 genomes]
rs1335535	1.00[CEU][hapmap];1.00[GIH][hapmap];0.87[TSI][hapmap];0.97[EUR][1000 genomes]
rs1335537	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs1335538	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs1414278	0.99[AFR][1000 genomes]
rs1414279	0.94[EUR][1000 genomes]
rs1414283	1.00[CEU][hapmap];1.00[GIH][hapmap];0.95[YRI][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1414284	0.92[EUR][1000 genomes]
rs1537739	0.89[EUR][1000 genomes]
rs1537740	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs1582079	1.00[CEU][hapmap];0.94[YRI][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16890450	0.94[EUR][1000 genomes]
rs1832088	0.92[EUR][1000 genomes]
rs1832089	0.92[EUR][1000 genomes]
rs1889685	0.89[EUR][1000 genomes]
rs2095633	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2322216	1.00[CEU][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2322219	0.89[EUR][1000 genomes]
rs2874732	0.92[EUR][1000 genomes]
rs2874733	0.92[EUR][1000 genomes]
rs3934335	0.92[EUR][1000 genomes]
rs4112504	0.92[EUR][1000 genomes]
rs4235810	0.89[EUR][1000 genomes]
rs4301272	0.89[EUR][1000 genomes]
rs4377755	0.92[EUR][1000 genomes]
rs4407672	0.92[EUR][1000 genomes]
rs4418150	0.85[CEU][hapmap];0.89[EUR][1000 genomes]
rs4432946	0.89[EUR][1000 genomes]
rs4464749	0.92[EUR][1000 genomes]
rs4470813	0.92[EUR][1000 genomes]
rs4537102	0.89[EUR][1000 genomes]
rs4555887	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs4706754	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4706755	1.00[CEU][hapmap];0.90[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4706756	1.00[CEU][hapmap];1.00[GIH][hapmap];0.87[TSI][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4706759	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs4706760	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs4706765	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs4706766	0.92[EUR][1000 genomes]
rs55635444	0.92[EUR][1000 genomes]
rs56183421	0.89[EUR][1000 genomes]
rs56193084	0.94[EUR][1000 genomes]
rs56354335	0.94[EUR][1000 genomes]
rs56955811	0.94[EUR][1000 genomes]
rs57340384	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs57608966	0.94[EUR][1000 genomes]
rs59152048	0.92[EUR][1000 genomes]
rs59858042	0.92[EUR][1000 genomes]
rs61227507	0.92[EUR][1000 genomes]
rs61558200	0.94[EUR][1000 genomes]
rs62411290	0.92[EUR][1000 genomes]
rs6454106	0.92[EUR][1000 genomes]
rs6907042	0.92[EUR][1000 genomes]
rs6907264	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6913297	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs6917165	1.00[CEU][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6924790	0.92[EUR][1000 genomes]
rs6929660	0.89[EUR][1000 genomes]
rs6941433	0.92[EUR][1000 genomes]
rs73468020	0.97[EUR][1000 genomes]
rs73468035	0.94[EUR][1000 genomes]
rs73767530	0.94[EUR][1000 genomes]
rs7738508	0.92[EUR][1000 genomes]
rs7739118	0.89[EUR][1000 genomes]
rs7746915	0.92[EUR][1000 genomes]
rs7751974	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs7752593	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs7757062	0.89[EUR][1000 genomes]
rs7760458	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7760939	0.89[EUR][1000 genomes]
rs7763232	0.92[EUR][1000 genomes]
rs7764517	0.92[EUR][1000 genomes]
rs7770245	0.92[EUR][1000 genomes]
rs7772967	0.92[EUR][1000 genomes]
rs9341761	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs9343890	0.87[EUR][1000 genomes]
rs9350803	1.00[CEU][hapmap];1.00[GIH][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9352710	0.92[EUR][1000 genomes]
rs9359369	1.00[CEU][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9361504	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9361511	0.92[EUR][1000 genomes]
rs9443654	1.00[CEU][hapmap];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830706	chr6:79825910-79994878	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1028607	chr6:79853272-80767716	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79906800-79935600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr6:79907400-79942800	Weak transcription	HSMM	muscle
3	chr6:79907600-79940800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr6:79908400-79938600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr6:79910800-79935600	Weak transcription	NHEK	skin
6	chr6:79911000-79928800	Weak transcription	Brain Substantia Nigra	brain
7	chr6:79912400-79940600	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr6:79912600-79927600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr6:79912600-79931000	Weak transcription	Rectal Smooth Muscle	rectum
10	chr6:79912800-79942600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr6:79913200-79943000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr6:79913200-79943200	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr6:79916400-79930400	Weak transcription	Brain Germinal Matrix	brain
14	chr6:79916400-79935400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr6:79916400-79943200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr6:79916600-79927600	Weak transcription	Esophagus	oesophagus
17	chr6:79916600-79933000	Weak transcription	Spleen	Spleen
18	chr6:79916800-79927600	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr6:79917800-79929200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr6:79917800-79929600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr6:79917800-79941000	Weak transcription	Hela-S3	cervix
22	chr6:79918200-79942000	Weak transcription	Primary T cells fromperipheralblood	blood
23	chr6:79920200-79927400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr6:79920200-79928800	Weak transcription	GM12878-XiMat	blood
25	chr6:79920200-79933400	Weak transcription	Primary hematopoietic stem cells	blood
26	chr6:79920400-79927400	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr6:79920400-79927400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr6:79920400-79940600	Weak transcription	Dnd41	blood
29	chr6:79920400-79943000	Weak transcription	Fetal Muscle Trunk	muscle
30	chr6:79920600-79927600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr6:79920600-79927600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr6:79920600-79928600	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr6:79920600-79931400	Weak transcription	Aorta	Aorta
34	chr6:79920800-79939200	Weak transcription	Fetal Thymus	thymus
35	chr6:79921600-79933000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr6:79924800-79927800	Enhancers	Skeletal Muscle Female	skeletal muscle
37	chr6:79924800-79928800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr6:79924800-79929800	Enhancers	HUES64 Cell Line	embryonic stem cell
39	chr6:79925000-79933600	Weak transcription	Primary B cells from cord blood	blood
40	chr6:79925000-79935400	Weak transcription	Fetal Kidney	kidney
41	chr6:79925200-79928200	Weak transcription	NH-A	brain
42	chr6:79925200-79939600	Weak transcription	Fetal Brain Male	brain
43	chr6:79925400-79927200	Weak transcription	Brain Hippocampus Middle	brain
44	chr6:79925400-79927600	Weak transcription	Lung	lung
45	chr6:79925400-79927600	Weak transcription	Ovary	ovary
46	chr6:79925400-79931000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr6:79925400-79931000	Weak transcription	Left Ventricle	heart
48	chr6:79925400-79931400	Weak transcription	Gastric	stomach
49	chr6:79925400-79933000	Weak transcription	Fetal Intestine Large	intestine
50	chr6:79925400-79933200	Weak transcription	Pancreas	Pancrea

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