Variant report
Variant | rs2099356 |
---|---|
Chromosome Location | chr19:44315196-44315197 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr19:44173218..44174951-chr19:44314525..44317276,2 | MCF-7 | breast: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000011422 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs1036246 | 0.93[ASN][1000 genomes] |
rs10405318 | 0.94[ASN][1000 genomes] |
rs10408461 | 0.94[ASN][1000 genomes] |
rs10412955 | 0.93[ASN][1000 genomes] |
rs10415344 | 0.93[ASN][1000 genomes] |
rs10416116 | 0.94[ASN][1000 genomes] |
rs10500286 | 0.90[ASN][1000 genomes] |
rs10500287 | 0.83[ASN][1000 genomes] |
rs11878787 | 0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs11879541 | 0.94[ASN][1000 genomes] |
rs11880651 | 0.94[ASN][1000 genomes] |
rs12462507 | 0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs12608578 | 0.94[ASN][1000 genomes] |
rs13344589 | 0.92[ASN][1000 genomes] |
rs1549953 | 0.93[ASN][1000 genomes] |
rs1549954 | 0.93[ASN][1000 genomes] |
rs1549955 | 0.93[ASN][1000 genomes] |
rs1549956 | 0.93[ASN][1000 genomes] |
rs1549957 | 0.93[ASN][1000 genomes] |
rs1549959 | 0.93[ASN][1000 genomes] |
rs1565057 | 0.83[ASN][1000 genomes] |
rs17712224 | 0.91[ASN][1000 genomes] |
rs1909 | 0.93[ASN][1000 genomes] |
rs1964381 | 0.90[ASN][1000 genomes] |
rs1994414 | 0.93[ASN][1000 genomes] |
rs1994415 | 0.93[ASN][1000 genomes] |
rs1994416 | 0.93[ASN][1000 genomes] |
rs2016345 | 0.92[ASN][1000 genomes] |
rs2163855 | 0.94[ASN][1000 genomes] |
rs2195981 | 0.93[ASN][1000 genomes] |
rs2217669 | 0.93[ASN][1000 genomes] |
rs2356401 | 0.90[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs2356403 | 0.90[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs2356432 | 0.94[ASN][1000 genomes] |
rs2356433 | 0.94[ASN][1000 genomes] |
rs2356434 | 0.93[ASN][1000 genomes] |
rs2356438 | 0.93[ASN][1000 genomes] |
rs2356439 | 0.93[ASN][1000 genomes] |
rs239948 | 0.93[ASN][1000 genomes] |
rs239949 | 0.93[ASN][1000 genomes] |
rs349032 | 0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs4511643 | 0.93[ASN][1000 genomes] |
rs57096959 | 0.94[ASN][1000 genomes] |
rs57133938 | 0.93[ASN][1000 genomes] |
rs59503823 | 0.88[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs60036744 | 0.93[ASN][1000 genomes] |
rs60085895 | 0.91[ASN][1000 genomes] |
rs62114569 | 0.93[ASN][1000 genomes] |
rs62118368 | 0.93[ASN][1000 genomes] |
rs62118369 | 0.94[ASN][1000 genomes] |
rs62118371 | 0.93[ASN][1000 genomes] |
rs62118372 | 0.93[ASN][1000 genomes] |
rs6509120 | 0.93[ASN][1000 genomes] |
rs7247308 | 0.94[ASN][1000 genomes] |
rs7247863 | 0.93[ASN][1000 genomes] |
rs7248807 | 0.89[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs7249057 | 0.90[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs7253002 | 0.94[ASN][1000 genomes] |
rs7253384 | 0.94[ASN][1000 genomes] |
rs7253606 | 0.94[ASN][1000 genomes] |
rs7254659 | 0.93[ASN][1000 genomes] |
rs7259647 | 0.91[ASN][1000 genomes] |
rs73052639 | 0.97[ASN][1000 genomes] |
rs73052665 | 0.93[ASN][1000 genomes] |
rs7508701 | 0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs8099861 | 0.93[ASN][1000 genomes] |
rs8106802 | 0.93[ASN][1000 genomes] |
rs8112065 | 0.93[ASN][1000 genomes] |
rs8113286 | 0.93[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv532821 | chr19:43842383-44357315 | Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 62 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr19:44313600-44315600 | Weak transcription | Foreskin Melanocyte Primary Cells skin03 | Skin |
2 | chr19:44313800-44319200 | Weak transcription | Foreskin Keratinocyte Primary Cells skin03 | Skin |
3 | chr19:44314000-44318800 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
4 | chr19:44314200-44318800 | Weak transcription | HMEC | breast |
5 | chr19:44314200-44318800 | Weak transcription | NHEK | skin |
6 | chr19:44314400-44315600 | Weak transcription | Primary T helper 17 cells PMA-I stimulated | -- |
7 | chr19:44314800-44316200 | Weak transcription | Primary T helper memory cells from peripheral blood 2 | blood |