Variant report

Variant	rs2356403
Chromosome Location	chr19:44322113-44322114
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:44317384..44320370-chr19:44321357..44322963,2	MCF-7	breast:
2	chr19:44316369..44317952-chr19:44320747..44323112,2	K562	blood:
3	chr19:44318951..44322620-chr19:44323197..44325129,3	K562	blood:

Variant related genes	Relation type
ENSG00000159871	Chromatin interaction

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs1036246	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10405318	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10408461	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10412955	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10415344	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10416116	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10421861	0.81[EUR][1000 genomes]
rs10500286	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10500287	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11878787	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11879541	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11880651	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12462507	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12608578	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13344589	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1549953	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1549954	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1549955	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1549956	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1549957	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1549959	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1565057	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17712224	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1909	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1964381	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1994414	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1994415	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1994416	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2016345	0.95[ASN][1000 genomes]
rs2099356	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2163855	0.97[ASN][1000 genomes]
rs2195981	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2217669	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2356401	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2356432	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2356433	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2356434	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2356438	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2356439	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs239948	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs239949	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs349032	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4511643	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57096959	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57133938	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59503823	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60036744	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60085895	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62114569	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62118368	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62118369	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62118371	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62118372	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6509120	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7247308	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7247863	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7248807	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7249057	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7253002	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7253384	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7253606	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7254659	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7259647	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73052639	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73052665	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7508701	0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8099861	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8106802	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8112065	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8113286	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532821	chr19:43842383-44357315	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44319400-44324200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr19:44319800-44322200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr19:44319800-44322200	Weak transcription	NHEK	skin
4	chr19:44321600-44323800	Weak transcription	Brain Angular Gyrus	brain
5	chr19:44321800-44323800	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr19:44321800-44324000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr19:44321800-44324200	Weak transcription	HSMMtube	muscle

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