The 2.0 version of rSNPBase

Variant report

Variant rs13344589
Chromosome Location chr19:44347499-44347500
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:107 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:44332800-44348200 Strong transcription Foreskin Fibroblast Primary Cells skin02 Skin
2 chr19:44332800-44357200 ZNF genes & repeats Liver Liver
3 chr19:44333600-44357400 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
4 chr19:44334000-44353200 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Female --
5 chr19:44335200-44357200 ZNF genes & repeats Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
6 chr19:44335200-44368200 ZNF genes & repeats Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
7 chr19:44335400-44357200 ZNF genes & repeats Breast Myoepithelial Primary Cells Breast
8 chr19:44335400-44366600 ZNF genes & repeats Duodenum Smooth Muscle Duodenum
9 chr19:44336600-44357600 ZNF genes & repeats Adipose Nuclei Adipose
10 chr19:44336800-44353000 ZNF genes & repeats Primary hematopoietic stem cells short term culture blood
11 chr19:44336800-44356800 ZNF genes & repeats Duodenum Mucosa Duodenum
12 chr19:44336800-44357200 ZNF genes & repeats Fetal Lung lung
13 chr19:44337200-44347800 ZNF genes & repeats Primary neutrophils fromperipheralblood blood
14 chr19:44337800-44347600 ZNF genes & repeats Fetal Muscle Leg muscle
15 chr19:44338000-44349600 ZNF genes & repeats Primary T regulatory cells fromperipheralblood blood
16 chr19:44338000-44352800 ZNF genes & repeats IMR90 fetal lung fibroblasts Cell Line lung
17 chr19:44339000-44349600 ZNF genes & repeats Monocytes-CD14+_RO01746 blood
18 chr19:44339000-44352800 ZNF genes & repeats Rectal Smooth Muscle rectum
19 chr19:44339000-44355400 ZNF genes & repeats Pancreatic Islets Pancreatic Islet
20 chr19:44339200-44347600 ZNF genes & repeats Fetal Brain Female brain
21 chr19:44339200-44347600 ZNF genes & repeats Sigmoid Colon Sigmoid Colon
22 chr19:44339200-44348000 ZNF genes & repeats Colonic Mucosa Colon
23 chr19:44339200-44348200 ZNF genes & repeats Psoas Muscle Psoas
24 chr19:44339200-44348400 Strong transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
25 chr19:44339200-44349000 ZNF genes & repeats Cortex derived primary cultured neurospheres brain
26 chr19:44339200-44349000 ZNF genes & repeats Rectal Mucosa Donor 31 rectum
27 chr19:44339200-44349400 ZNF genes & repeats A549 lung
28 chr19:44339200-44349600 ZNF genes & repeats Primary T helper cells fromperipheralblood blood
29 chr19:44339200-44349600 ZNF genes & repeats Brain Angular Gyrus brain
30 chr19:44339200-44355400 ZNF genes & repeats Primary B cells from cord blood blood
31 chr19:44339200-44355400 ZNF genes & repeats Rectal Mucosa Donor 29 rectum
32 chr19:44339200-44357200 ZNF genes & repeats Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
33 chr19:44339400-44347800 ZNF genes & repeats Brain Germinal Matrix brain
34 chr19:44339400-44348200 ZNF genes & repeats Ganglion Eminence derived primary cultured neurospheres brain
35 chr19:44339400-44349600 ZNF genes & repeats iPS-20b Cell Line embryonic stem cell
36 chr19:44339400-44349600 ZNF genes & repeats Brain Substantia Nigra brain
37 chr19:44339400-44350200 ZNF genes & repeats Primary T killer naive cells fromperipheralblood blood
38 chr19:44339400-44352600 ZNF genes & repeats Primary B cells from peripheral blood blood
39 chr19:44339400-44352600 ZNF genes & repeats Primary T helper memory cells from peripheral blood 1 blood
40 chr19:44339400-44355400 ZNF genes & repeats Primary T cells from cord blood blood
41 chr19:44339400-44355600 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
42 chr19:44339600-44355400 ZNF genes & repeats Primary T helper cells PMA-I stimulated --
43 chr19:44339800-44348000 ZNF genes & repeats Colon Smooth Muscle Colon
44 chr19:44340400-44348000 ZNF genes & repeats Fetal Adrenal Gland Adrenal Gland
45 chr19:44340800-44347600 ZNF genes & repeats Primary mononuclear cells fromperipheralblood Blood
46 chr19:44340800-44350000 ZNF genes & repeats Foreskin Keratinocyte Primary Cells skin03 Skin
47 chr19:44340800-44353000 ZNF genes & repeats Foreskin Melanocyte Primary Cells skin03 Skin
48 chr19:44341000-44347800 ZNF genes & repeats hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
49 chr19:44341000-44347800 ZNF genes & repeats NHEK skin
50 chr19:44341000-44348000 ZNF genes & repeats GM12878-XiMat blood

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Last update: Aug 31, 2015