Variant report

Variant	rs2101056
Chromosome Location	chr3:51299358-51299359
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10510757	0.82[CHB][hapmap]
rs12487468	0.89[CHB][hapmap]
rs12489219	0.94[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12491048	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs12492615	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12493034	0.98[ASN][1000 genomes]
rs12493323	0.94[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12493978	0.89[CHB][hapmap]
rs12495405	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12495561	0.94[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12496830	0.93[ASN][1000 genomes]
rs1809388	0.97[ASN][1000 genomes]
rs1842394	0.94[CHB][hapmap];0.81[ASN][1000 genomes]
rs2061949	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2086395	0.98[ASN][1000 genomes]
rs2127654	0.94[ASN][1000 genomes]
rs2170177	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2306430	0.90[CHB][hapmap]
rs2306431	0.89[CHB][hapmap]
rs2355946	0.95[ASN][1000 genomes]
rs3762711	0.95[ASN][1000 genomes]
rs4130473	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4346580	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs4468966	0.89[CHB][hapmap]
rs4687566	1.00[AFR][1000 genomes]
rs4927961	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs4974096	0.89[CHB][hapmap]
rs4974100	0.94[ASN][1000 genomes]
rs4974112	0.94[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs56052360	0.98[ASN][1000 genomes]
rs58911602	0.98[ASN][1000 genomes]
rs59129045	0.95[ASN][1000 genomes]
rs60128296	0.98[ASN][1000 genomes]
rs60567238	0.98[ASN][1000 genomes]
rs60740654	0.97[ASN][1000 genomes]
rs61660900	0.96[ASN][1000 genomes]
rs6792254	0.94[ASN][1000 genomes]
rs72936442	0.98[ASN][1000 genomes]
rs72936462	0.95[ASN][1000 genomes]
rs72953175	0.95[ASN][1000 genomes]
rs751076	0.82[CHB][hapmap]
rs880478	0.90[CHB][hapmap]
rs9817077	0.89[CHB][hapmap];0.83[ASN][1000 genomes]
rs9817872	0.89[CHB][hapmap];0.83[ASN][1000 genomes]
rs9819195	0.89[CHB][hapmap]
rs9829057	0.89[CHB][hapmap]
rs9856134	0.89[CHB][hapmap]
rs9878592	0.94[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005858	chr3:51090373-51444027	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv536569	chr3:51090373-51444027	Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv1014464	chr3:51220151-51909780	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:51252000-51312600	Weak transcription	HSMMtube	muscle
2	chr3:51253400-51312200	Weak transcription	Brain Substantia Nigra	brain
3	chr3:51285400-51308200	Weak transcription	Brain Anterior Caudate	brain
4	chr3:51288200-51319200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr3:51295600-51310800	Weak transcription	Brain Cingulate Gyrus	brain
6	chr3:51296400-51318800	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr3:51297000-51317400	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr3:51297400-51299600	Strong transcription	Brain Germinal Matrix	brain
9	chr3:51297400-51299600	Strong transcription	Brain Hippocampus Middle	brain
10	chr3:51297600-51299400	Strong transcription	Brain Inferior Temporal Lobe	brain
11	chr3:51297600-51299400	Strong transcription	Fetal Brain Female	brain
12	chr3:51297600-51304000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr3:51298000-51314400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr3:51298000-51320800	Weak transcription	Stomach Smooth Muscle	stomach
15	chr3:51298400-51319000	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr3:51298600-51299400	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr3:51298800-51299400	Strong transcription	Cortex derived primary cultured neurospheres	brain
18	chr3:51298800-51299800	Strong transcription	Brain Angular Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links