Variant report

Variant	rs2355946
Chromosome Location	chr3:51338666-51338667
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs12487468	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12487496	0.84[EUR][1000 genomes]
rs12489219	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12490026	0.84[EUR][1000 genomes]
rs12490889	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12491048	0.80[ASN][1000 genomes]
rs12491836	0.84[EUR][1000 genomes]
rs12492615	0.84[EUR][1000 genomes]
rs12492690	0.84[EUR][1000 genomes]
rs12493034	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12493323	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12493978	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12495561	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12496830	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1809388	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1842394	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2086395	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2101056	0.95[ASN][1000 genomes]
rs2127654	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2170177	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2241785	0.80[ASN][1000 genomes]
rs2306430	0.83[ASN][1000 genomes]
rs2306431	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs3762711	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4130473	0.84[EUR][1000 genomes]
rs4346580	0.84[EUR][1000 genomes]
rs4468966	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4927961	0.84[EUR][1000 genomes]
rs4974096	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4974100	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4974112	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56052360	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57047724	0.82[ASN][1000 genomes]
rs57406588	0.84[EUR][1000 genomes]
rs57603251	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs58201844	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs58911602	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59129045	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59682667	0.84[EUR][1000 genomes]
rs59834534	0.84[EUR][1000 genomes]
rs59953568	0.83[ASN][1000 genomes]
rs60128296	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60461297	0.84[EUR][1000 genomes]
rs60567238	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60740654	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61660900	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6792254	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72936442	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72936462	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72941919	0.84[EUR][1000 genomes]
rs72943166	0.84[EUR][1000 genomes]
rs72945708	0.84[ASN][1000 genomes]
rs72948197	0.84[EUR][1000 genomes]
rs72948200	0.84[EUR][1000 genomes]
rs72953143	0.84[EUR][1000 genomes]
rs72953162	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72953175	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73837439	0.83[ASN][1000 genomes]
rs751076	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs880478	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9817077	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9817872	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9819195	0.88[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9829057	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9856134	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9878592	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005858	chr3:51090373-51444027	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv536569	chr3:51090373-51444027	Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv1014464	chr3:51220151-51909780	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:51315400-51350000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr3:51331000-51343600	Weak transcription	Brain Hippocampus Middle	brain
3	chr3:51338200-51341200	Weak transcription	Brain Inferior Temporal Lobe	brain

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