The 2.0 version of rSNPBase

Variant report

Variant rs12491048
Chromosome Location chr3:51416140-51416141
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:46 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:51378600-51421000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
2 chr3:51378800-51421400 Weak transcription Right Ventricle heart
3 chr3:51384200-51420600 Weak transcription Fetal Brain Male brain
4 chr3:51392800-51418600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
5 chr3:51406000-51417000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
6 chr3:51406000-51420200 Weak transcription HUES64 Cell Line embryonic stem cell
7 chr3:51406000-51420400 Weak transcription H1 Cell Line embryonic stem cell
8 chr3:51406000-51420400 Weak transcription iPS-20b Cell Line embryonic stem cell
9 chr3:51406000-51420600 Weak transcription HUES48 Cell Line embryonic stem cell
10 chr3:51406000-51420800 Weak transcription iPS-15b Cell Line embryonic stem cell
11 chr3:51406000-51420800 Weak transcription Duodenum Smooth Muscle Duodenum
12 chr3:51406000-51421400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
13 chr3:51406400-51420600 Weak transcription H9 Cell Line embryonic stem cell
14 chr3:51406400-51421600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
15 chr3:51410000-51421400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
16 chr3:51410400-51417800 Strong transcription Brain Germinal Matrix brain
17 chr3:51410400-51420600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
18 chr3:51410600-51419200 Weak transcription Fetal Stomach stomach
19 chr3:51411000-51420000 Strong transcription Brain Cingulate Gyrus brain
20 chr3:51411000-51420000 Strong transcription Brain Inferior Temporal Lobe brain
21 chr3:51411200-51416400 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
22 chr3:51411200-51420000 Strong transcription Fetal Brain Female brain
23 chr3:51412400-51420600 Weak transcription HUES6 Cell Line embryonic stem cell
24 chr3:51413800-51419800 Strong transcription Stomach Smooth Muscle stomach
25 chr3:51414000-51416200 Enhancers Primary hematopoietic stem cells short term culture blood
26 chr3:51414400-51420600 Weak transcription Cortex derived primary cultured neurospheres brain
27 chr3:51414600-51416400 Weak transcription Spleen Spleen
28 chr3:51414600-51416600 Weak transcription Brain Hippocampus Middle brain
29 chr3:51414600-51419600 Enhancers Primary hematopoietic stem cells blood
30 chr3:51414800-51417000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
31 chr3:51414800-51421400 Weak transcription HSMMtube muscle
32 chr3:51415000-51417600 Enhancers Primary T cells from cord blood blood
33 chr3:51415000-51419000 Weak transcription Brain Substantia Nigra brain
34 chr3:51415200-51417800 Enhancers Primary T helper naive cells fromperipheralblood blood
35 chr3:51415200-51421200 Weak transcription Brain Angular Gyrus brain
36 chr3:51415400-51418000 Enhancers Thymus Thymus
37 chr3:51415400-51418400 Enhancers Fetal Thymus thymus
38 chr3:51415400-51420800 Weak transcription Brain Anterior Caudate brain
39 chr3:51415600-51416200 Weak transcription Primary T helper cells PMA-I stimulated --
40 chr3:51415600-51420600 Weak transcription ES-I3 Cell Line embryonic stem cell
41 chr3:51415800-51417400 Enhancers Fetal Muscle Leg muscle
42 chr3:51415800-51417800 Enhancers Fetal Muscle Trunk muscle
43 chr3:51415800-51418000 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
44 chr3:51416000-51416200 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Female --
45 chr3:51416000-51416800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
46 chr3:51416000-51417400 Enhancers Primary T killer naive cells fromperipheralblood blood

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Last update: Aug 31, 2015