Variant report

Variant	rs1370124
Chromosome Location	chr3:51422188-51422189
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:51421590-51424434	HepG2	liver:	n/a	n/a
2	MAZ	chr3:51421888-51423398	K562	blood:	n/a	n/a
3	CREB1	chr3:51421997-51422904	HepG2	liver:	n/a	n/a
4	POLR2A	chr3:51422167-51422931	SK-N-SH	brain:	n/a	n/a
5	THAP1	chr3:51421832-51422735	K562	blood:	n/a	chr3:51422444-51422468
6	POLR2A	chr3:51421825-51423051	HL-60	blood:	n/a	n/a
7	RELA	chr3:51421672-51422912	GM15510	blood:	n/a	n/a
8	MXI1	chr3:51421559-51423522	IMR90	lung:	n/a	chr3:51422148-51422157
9	TCF7L2	chr3:51421921-51422709	PANC-1	pancreas:	n/a	chr3:51422176-51422183
10	TBP	chr3:51422126-51422969	K562	blood:	n/a	n/a
11	KAP1	chr3:51421637-51422700	HEK293	kidney:	n/a	n/a
12	MAX	chr3:51421916-51422908	A549	lung:	n/a	n/a
13	YY1	chr3:51422100-51422854	HCT-116	colon:	n/a	chr3:51422460-51422468 chr3:51422447-51422469 chr3:51422464-51422478 chr3:51422453-51422470 chr3:51422452-51422471 chr3:51422458-51422466 chr3:51422459-51422469
14	HCFC1	chr3:51422081-51422872	K562	blood:	n/a	n/a
15	POLR2A	chr3:51421856-51423018	U87	brain:	n/a	n/a
16	TAF1	chr3:51422188-51422931	GM12892	blood:	n/a	n/a
17	POLR2A	chr3:51421905-51423018	U87	brain:	n/a	n/a
18	GTF2F1	chr3:51421652-51422850	H1-hESC	embryonic stem cell:	n/a	n/a
19	CHD2	chr3:51422068-51422959	Hela-S3	cervix:	n/a	chr3:51422316-51422326
20	POLR2A	chr3:51421388-51423563	HUVEC	blood vessel:	n/a	n/a
21	POLR2A	chr3:51421892-51422939	PANC-1	pancreas:	n/a	n/a
22	YY1	chr3:51421930-51422914	K562	blood:	n/a	chr3:51422460-51422468 chr3:51422447-51422469 chr3:51422464-51422478 chr3:51422453-51422470 chr3:51422452-51422471 chr3:51422458-51422466 chr3:51422459-51422469
23	SIN3AK20	chr3:51421860-51422422	H1-hESC	embryonic stem cell:	n/a	n/a
24	SP1	chr3:51422159-51422886	A549	lung:	n/a	chr3:51422559-51422580 chr3:51422611-51422632
25	RCOR1	chr3:51421865-51422903	GM12878	blood:	n/a	n/a
26	ELF1	chr3:51422038-51422911	GM12878	blood:	n/a	chr3:51422137-51422149
27	POLR2A	chr3:51421840-51422993	HCT-116	colon:	n/a	n/a
28	CREB1	chr3:51422066-51422975	K562	blood:	n/a	n/a
29	POLR2A	chr3:51421504-51424580	GM12878	blood:	n/a	n/a
30	TAF7	chr3:51422021-51423013	H1-hESC	embryonic stem cell:	n/a	n/a
31	POLR2A	chr3:51421928-51423279	MCF-7	breast:	n/a	n/a
32	POLR2A	chr3:51421546-51423632	GM18505	blood:	n/a	n/a
33	HEY1	chr3:51421852-51422898	HepG2	liver:	n/a	chr3:51422701-51422716
34	POU2F2	chr3:51422178-51422906	GM12891	blood:	n/a	n/a
35	POLR2A	chr3:51421862-51422901	GM12891	blood:	n/a	n/a
36	YY1	chr3:51422084-51422732	K562	blood:	n/a	chr3:51422460-51422468 chr3:51422447-51422469 chr3:51422464-51422478 chr3:51422453-51422470 chr3:51422452-51422471 chr3:51422458-51422466 chr3:51422459-51422469
37	HA-E2F1	chr3:51421812-51422835	MCF-7	breast:	n/a	chr3:51422731-51422741 chr3:51422061-51422071 chr3:51422063-51422077 chr3:51422560-51422569
38	YY1	chr3:51422049-51422725	HepG2	liver:	n/a	chr3:51422460-51422468 chr3:51422447-51422469 chr3:51422464-51422478 chr3:51422453-51422470 chr3:51422452-51422471 chr3:51422458-51422466 chr3:51422459-51422469
39	SIN3A	chr3:51421556-51423462	H1-hESC	embryonic stem cell:	n/a	n/a
40	CREB1	chr3:51421860-51422970	GM12878	blood:	n/a	n/a
41	TCF12	chr3:51422070-51422887	ECC-1	luminal epithelium:	n/a	n/a
42	JUND	chr3:51421818-51422878	H1-hESC	embryonic stem cell:	n/a	chr3:51422246-51422255
43	STAT5A	chr3:51421991-51422545	GM12878	blood:	n/a	chr3:51422215-51422226 chr3:51422257-51422265
44	TBP	chr3:51422028-51422927	HepG2	liver:	n/a	n/a
45	E2F4	chr3:51422003-51422868	MCF10A-Er-Src	breast:	n/a	chr3:51422731-51422741 chr3:51422061-51422071 chr3:51422063-51422077 chr3:51422560-51422569
46	SP1	chr3:51422135-51422946	A549	lung:	n/a	chr3:51422559-51422580 chr3:51422611-51422632
47	GABPA	chr3:51422043-51422922	MCF-7	breast:	n/a	n/a
48	BRCA1	chr3:51422023-51422535	HepG2	liver:	n/a	n/a
49	POLR2A	chr3:51422100-51422941	HepG2	liver:	n/a	n/a
50	POLR2A	chr3:51421612-51424387	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr3:51421541..51423885-chr3:51533443..51535010,2	K562	blood:
2	chr1:210546654..210547649-chr3:51421677..51422307,2	Hela-S3	cervix:
3	chr3:51421943..51424034-chr3:52001693..52003789,2	MCF-7	breast:
4	chr3:51421956..51422564-chr4:129732676..129733360,2	Hela-S3	cervix:
5	chr3:50608421..50610660-chr3:51421926..51423993,2	K562	blood:
6	chr3:50653554..50655888-chr3:51421381..51423092,3	K562	blood:
7	chr3:50646919..50649117-chr3:51419944..51422467,2	MCF-7	breast:
8	chr3:50653838..50655939-chr3:51422109..51423890,2	MCF-7	breast:
9	chr3:51420258..51423192-chr3:51532829..51535179,2	K562	blood:

Variant related genes	Relation type
MANF	TF binding region
ENSG00000088543	Chromatin interaction
ENSG00000200972	Chromatin interaction
ENSG00000145041	Chromatin interaction
ENSG00000090097	Chromatin interaction
ENSG00000077684	Chromatin interaction
ENSG00000114738	Chromatin interaction

Extended variants
information (count: 117 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:111)

rs_ID	r²[population]
rs10510757	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10510758	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12485610	0.92[ASN][1000 genomes]
rs12487426	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12487468	0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.84[MEX][hapmap];0.87[TSI][hapmap];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12489219	0.83[CHD][hapmap];0.89[MEX][hapmap];0.87[TSI][hapmap]
rs12489414	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12490471	0.92[ASN][1000 genomes]
rs12490889	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12491048	0.99[ASN][1000 genomes]
rs12492624	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12493265	0.90[ASN][1000 genomes]
rs12493618	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12493857	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12493978	0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12494462	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12494979	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13089799	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13090348	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17051783	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17051811	0.87[ASN][1000 genomes]
rs17661242	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17712228	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1842394	0.94[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs2033703	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2061949	0.83[MEX][hapmap]
rs2082992	0.91[ASN][1000 genomes]
rs2082993	0.89[ASN][1000 genomes]
rs2101056	0.82[CHB][hapmap]
rs2170177	0.83[CHB][hapmap];0.83[CHD][hapmap];0.81[GIH][hapmap];0.83[MEX][hapmap];0.81[ASN][1000 genomes]
rs2217938	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2241785	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2304512	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2306430	0.94[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2306431	0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2356261	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2356298	0.92[ASN][1000 genomes]
rs35536327	0.87[ASN][1000 genomes]
rs3749317	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3792408	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3804766	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3828395	0.94[CHB][hapmap];0.97[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4468966	0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4687553	0.88[ASN][1000 genomes]
rs4687563	0.89[ASN][1000 genomes]
rs4687601	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4687605	0.92[ASN][1000 genomes]
rs4687610	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4687656	0.91[ASN][1000 genomes]
rs4687691	0.89[ASN][1000 genomes]
rs4687731	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4687777	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4687794	0.89[ASN][1000 genomes]
rs4687803	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4687804	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4687811	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4687812	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4687813	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4974096	0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4974098	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4974112	0.83[CHD][hapmap];0.89[MEX][hapmap];0.87[TSI][hapmap]
rs55667499	0.89[ASN][1000 genomes]
rs55671465	0.83[ASN][1000 genomes]
rs56239081	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56729479	0.92[ASN][1000 genomes]
rs57027950	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57047724	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57603251	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57700326	0.85[ASN][1000 genomes]
rs57831708	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58059174	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs58201844	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58568178	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58836277	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59563413	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59838596	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59953568	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60606339	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs61233013	0.89[ASN][1000 genomes]
rs61419317	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61689323	0.90[ASN][1000 genomes]
rs72945708	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72945713	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72951443	0.90[ASN][1000 genomes]
rs73834252	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73834253	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73834254	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73834258	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs73837436	0.92[AFR][1000 genomes]
rs73837439	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73837442	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73837443	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs751076	0.89[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7630259	0.88[LWK][hapmap]
rs7635095	0.88[LWK][hapmap]
rs7642077	0.88[LWK][hapmap]
rs7642698	0.90[ASN][1000 genomes]
rs880478	0.94[CHB][hapmap];0.94[JPT][hapmap];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9817077	0.94[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];0.94[JPT][hapmap];0.84[MEX][hapmap];0.89[ASN][1000 genomes]
rs9817872	0.94[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];0.94[JPT][hapmap];0.84[MEX][hapmap];0.89[ASN][1000 genomes]
rs9819195	0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9820140	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9827186	0.87[ASN][1000 genomes]
rs9829057	0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.91[ASN][1000 genomes]
rs9842600	0.89[ASN][1000 genomes]
rs9843583	0.88[ASN][1000 genomes]
rs9856134	0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9861019	0.84[ASN][1000 genomes]
rs9872991	0.81[ASN][1000 genomes]
rs9878592	0.83[CHD][hapmap];0.89[MEX][hapmap];0.87[TSI][hapmap]
rs9990213	0.81[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005858	chr3:51090373-51444027	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv536569	chr3:51090373-51444027	Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv1014464	chr3:51220151-51909780	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
4	nsv460536	chr3:51395571-51469107	Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv590276	chr3:51395571-51469107	Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases
6	nsv590277	chr3:51408051-51474418	Strong transcription Active TSS Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:51420800-51423400	Active TSS	NHDF-Ad	bronchial
2	chr3:51420800-51423600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:51421000-51423200	Active TSS	Rectal Mucosa Donor 29	rectum
4	chr3:51421000-51423600	Active TSS	ES-I3 Cell Line	embryonic stem cell
5	chr3:51421000-51423600	Active TSS	HSMM	muscle
6	chr3:51421000-51423800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr3:51421000-51423800	Active TSS	HMEC	breast
8	chr3:51421000-51423800	Active TSS	NHLF	lung
9	chr3:51421000-51424000	Active TSS	H1 Cell Line	embryonic stem cell
10	chr3:51421200-51422200	Flanking Active TSS	Primary B cells from cord blood	blood
11	chr3:51421200-51422200	Flanking Active TSS	Primary hematopoietic stem cells	blood
12	chr3:51421200-51422200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr3:51421200-51423200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr3:51421200-51423200	Active TSS	Fetal Brain Male	brain
15	chr3:51421200-51423200	Active TSS	K562	blood
16	chr3:51421200-51423600	Active TSS	NHEK	skin
17	chr3:51421200-51424000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
18	chr3:51421200-51424000	Active TSS	A549	lung
19	chr3:51421400-51422200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
20	chr3:51421400-51422200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
21	chr3:51421400-51423000	Active TSS	Thymus	Thymus
22	chr3:51421400-51423200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr3:51421400-51423200	Active TSS	Fetal Intestine Small	intestine
24	chr3:51421400-51423200	Active TSS	Fetal Stomach	stomach
25	chr3:51421400-51423400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr3:51421400-51423400	Active TSS	Psoas Muscle	Psoas
27	chr3:51421400-51423600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr3:51421400-51423600	Active TSS	HUES48 Cell Line	embryonic stem cell
29	chr3:51421400-51423600	Active TSS	HUES6 Cell Line	embryonic stem cell
30	chr3:51421400-51423600	Active TSS	HUES64 Cell Line	embryonic stem cell
31	chr3:51421400-51423600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr3:51421400-51423600	Active TSS	iPS-20b Cell Line	embryonic stem cell
33	chr3:51421400-51423800	Active TSS	H9 Cell Line	embryonic stem cell
34	chr3:51421400-51423800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr3:51421400-51423800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr3:51421400-51423800	Active TSS	Right Atrium	heart
37	chr3:51421400-51423800	Active TSS	Right Ventricle	heart
38	chr3:51421400-51423800	Active TSS	GM12878-XiMat	blood
39	chr3:51421400-51424000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
40	chr3:51421400-51424000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr3:51421400-51424000	Active TSS	HSMMtube	muscle
42	chr3:51421400-51424600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr3:51421400-51426000	Active TSS	Pancreatic Islets	Pancreatic Islet
44	chr3:51421600-51422200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
45	chr3:51421600-51422200	Flanking Active TSS	Primary B cells from peripheral blood	blood
46	chr3:51421600-51422200	Flanking Active TSS	Primary T cells fromperipheralblood	blood
47	chr3:51421600-51422400	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
48	chr3:51421600-51423200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr3:51421600-51423200	Active TSS	Fetal Brain Female	brain
50	chr3:51421600-51423400	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links