Variant report

Variant	rs55671465
Chromosome Location	chr3:51538286-51538287
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:51532009..51535661-chr3:51535943..51538579,3	K562	blood:
2	chr3:51537197..51540003-chr3:51571776..51574071,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145041	Chromatin interaction

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs10510757	0.80[ASN][1000 genomes]
rs10510758	0.85[ASN][1000 genomes]
rs12485610	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12487426	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12487468	0.81[ASN][1000 genomes]
rs12489414	0.87[ASN][1000 genomes]
rs12490471	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12490889	0.81[ASN][1000 genomes]
rs12491048	0.84[ASN][1000 genomes]
rs12492624	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12493265	0.90[ASN][1000 genomes]
rs12493618	0.87[ASN][1000 genomes]
rs12493857	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12493978	0.81[ASN][1000 genomes]
rs12494462	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12494979	0.85[ASN][1000 genomes]
rs13089799	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs13090348	0.87[ASN][1000 genomes]
rs1370124	0.83[ASN][1000 genomes]
rs17051783	0.85[ASN][1000 genomes]
rs17051811	0.87[ASN][1000 genomes]
rs17661242	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs17712228	0.87[ASN][1000 genomes]
rs2033703	0.86[ASN][1000 genomes]
rs2082992	0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2082993	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2217938	0.85[ASN][1000 genomes]
rs2241785	0.84[ASN][1000 genomes]
rs2304512	0.85[ASN][1000 genomes]
rs2306430	0.81[ASN][1000 genomes]
rs2306431	0.81[ASN][1000 genomes]
rs2356261	0.85[ASN][1000 genomes]
rs2356298	0.91[ASN][1000 genomes]
rs35536327	0.87[ASN][1000 genomes]
rs3749317	0.85[ASN][1000 genomes]
rs3792408	0.85[ASN][1000 genomes]
rs3804766	0.85[ASN][1000 genomes]
rs3828395	0.84[ASN][1000 genomes]
rs4687553	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4687563	0.89[ASN][1000 genomes]
rs4687601	0.85[ASN][1000 genomes]
rs4687605	0.91[ASN][1000 genomes]
rs4687610	0.87[ASN][1000 genomes]
rs4687656	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4687691	0.88[ASN][1000 genomes]
rs4687731	0.85[ASN][1000 genomes]
rs4687777	0.85[ASN][1000 genomes]
rs4687794	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4687811	0.87[ASN][1000 genomes]
rs4687812	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4687813	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4974096	0.81[ASN][1000 genomes]
rs55667499	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs56239081	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs56729479	0.91[ASN][1000 genomes]
rs57027950	0.87[ASN][1000 genomes]
rs57047724	0.81[ASN][1000 genomes]
rs57831708	0.86[ASN][1000 genomes]
rs58059174	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs58568178	0.86[ASN][1000 genomes]
rs58836277	0.85[ASN][1000 genomes]
rs59563413	0.82[ASN][1000 genomes]
rs59838596	0.90[ASN][1000 genomes]
rs59953568	0.81[ASN][1000 genomes]
rs60606339	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs61233013	0.88[ASN][1000 genomes]
rs61419317	0.85[ASN][1000 genomes]
rs61689323	0.90[ASN][1000 genomes]
rs72945708	0.82[ASN][1000 genomes]
rs72945713	0.85[ASN][1000 genomes]
rs72951443	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs73834252	0.85[ASN][1000 genomes]
rs73834253	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs73834254	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs73834258	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs73837439	0.81[ASN][1000 genomes]
rs73837442	0.85[ASN][1000 genomes]
rs73837443	0.85[ASN][1000 genomes]
rs7642698	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9820140	0.86[ASN][1000 genomes]
rs9827186	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9842600	0.81[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs9843583	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9861019	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014464	chr3:51220151-51909780	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:51534800-51539600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:51535000-51541400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:51536200-51540200	Weak transcription	Stomach Smooth Muscle	stomach
4	chr3:51536400-51543200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr3:51537000-51543800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr3:51538000-51543400	Weak transcription	Placenta	Placenta

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