The 2.0 version of rSNPBase

Variant report

Variant rs56729479
Chromosome Location chr3:51528855-51528856
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:124 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:51491400-51532800 Weak transcription ES-I3 Cell Line embryonic stem cell
2 chr3:51495000-51532600 Weak transcription Pancreatic Islets Pancreatic Islet
3 chr3:51495800-51531800 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
4 chr3:51496000-51531800 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
5 chr3:51496200-51530600 Strong transcription Primary mononuclear cells fromperipheralblood Blood
6 chr3:51496200-51531000 Strong transcription Monocytes-CD14+_RO01746 blood
7 chr3:51499400-51532800 Weak transcription Fetal Heart heart
8 chr3:51500600-51532800 Weak transcription Fetal Kidney kidney
9 chr3:51501000-51532400 Weak transcription Psoas Muscle Psoas
10 chr3:51501000-51532800 Weak transcription NH-A brain
11 chr3:51504800-51533000 Weak transcription Placenta Amnion Placenta Amnion
12 chr3:51505000-51531600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
13 chr3:51505000-51533000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
14 chr3:51506600-51530800 Strong transcription Primary hematopoietic stem cells short term culture blood
15 chr3:51506600-51532600 Weak transcription iPS-15b Cell Line embryonic stem cell
16 chr3:51506600-51532600 Weak transcription K562 blood
17 chr3:51508200-51529800 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
18 chr3:51512400-51533000 Weak transcription Aorta Aorta
19 chr3:51515200-51529400 Weak transcription Hela-S3 cervix
20 chr3:51515400-51532600 Weak transcription HMEC breast
21 chr3:51515400-51532800 Weak transcription Primary T killer naive cells fromperipheralblood blood
22 chr3:51516200-51533000 Weak transcription Primary T killer memory cells from peripheral blood blood
23 chr3:51516400-51532800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
24 chr3:51516400-51533000 Weak transcription Stomach Mucosa stomach
25 chr3:51519200-51529000 Strong transcription Primary B cells from peripheral blood blood
26 chr3:51519200-51530400 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
27 chr3:51519400-51530600 Strong transcription Fetal Stomach stomach
28 chr3:51520400-51531000 Strong transcription Primary T regulatory cells fromperipheralblood blood
29 chr3:51520400-51531200 Strong transcription Fetal Intestine Small intestine
30 chr3:51521200-51530400 Strong transcription Dnd41 blood
31 chr3:51521200-51530800 Strong transcription Primary T helper cells fromperipheralblood blood
32 chr3:51521400-51530200 Strong transcription Liver Liver
33 chr3:51521400-51530400 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
34 chr3:51521400-51530600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
35 chr3:51521600-51530400 Strong transcription Primary T helper cells PMA-I stimulated --
36 chr3:51521600-51532600 Weak transcription NHDF-Ad bronchial
37 chr3:51522800-51531000 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
38 chr3:51523600-51531200 Strong transcription iPS-20b Cell Line embryonic stem cell
39 chr3:51524400-51533000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
40 chr3:51524600-51532400 Weak transcription GM12878-XiMat blood
41 chr3:51524600-51532800 Weak transcription Brain Angular Gyrus brain
42 chr3:51524600-51532800 Weak transcription HSMM muscle
43 chr3:51525600-51532400 Weak transcription Osteobl bone
44 chr3:51525600-51532800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
45 chr3:51525600-51532800 Weak transcription Brain Substantia Nigra brain
46 chr3:51525800-51533000 Weak transcription Colonic Mucosa Colon
47 chr3:51526000-51531200 Weak transcription Fetal Brain Male brain
48 chr3:51526000-51532600 Weak transcription Colon Smooth Muscle Colon
49 chr3:51526000-51532800 Weak transcription Primary T helper naive cells from peripheral blood blood
50 chr3:51526000-51532800 Weak transcription Skeletal Muscle Male skeletal muscle

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Last update: Aug 31, 2015