Variant report

Variant	rs2102264
Chromosome Location	chr15:78728608-78728609
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12914367	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1394372	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2036530	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2938673	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61157079	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73461579	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73461598	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73463003	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
3	nsv833063	chr15:78605215-78754945	Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78698200-78729800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:78725000-78729400	Weak transcription	Liver	Liver
3	chr15:78726400-78729600	Weak transcription	Primary hematopoietic stem cells	blood
4	chr15:78726800-78729000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr15:78726800-78729400	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr15:78726800-78729400	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr15:78726800-78729600	Weak transcription	Duodenum Mucosa	Duodenum
8	chr15:78726800-78729600	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr15:78727000-78729400	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr15:78727200-78729200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr15:78727200-78729600	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr15:78727800-78729400	Weak transcription	HepG2	liver
13	chr15:78728400-78729400	Enhancers	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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