Variant report

Variant	rs61157079
Chromosome Location	chr15:78746955-78746956
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:78728522..78731480-chr15:78746642..78749638,2	K562	blood:
2	chr15:78742068..78744487-chr15:78745696..78748456,2	K562	blood:
3	chr15:78742068..78744005-chr15:78744591..78747196,2	K562	blood:
4	chr15:78727207..78732074-chr15:78744204..78747986,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136381	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12914367	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1394372	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2036530	1.00[EUR][1000 genomes]
rs2102264	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2938673	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73461579	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73461598	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73463003	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
3	nsv833063	chr15:78605215-78754945	Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	esv1806890	chr15:78744695-78786064	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78731600-78756400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:78731600-78760200	Weak transcription	Aorta	Aorta
3	chr15:78732200-78747600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr15:78732200-78799400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr15:78732800-78758600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr15:78734000-78747200	Weak transcription	Fetal Brain Male	brain
7	chr15:78738600-78747400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr15:78738800-78747400	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr15:78739200-78747600	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr15:78739200-78748400	Weak transcription	HSMM	muscle
11	chr15:78739200-78748800	Weak transcription	HUVEC	blood vessel
12	chr15:78739200-78749600	Weak transcription	HSMMtube	muscle
13	chr15:78739200-78755200	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr15:78739400-78747600	Weak transcription	NHDF-Ad	bronchial
15	chr15:78739400-78747800	Weak transcription	Osteobl	bone
16	chr15:78739600-78755200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr15:78740400-78753200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr15:78740600-78748800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr15:78740600-78756000	Weak transcription	Brain Germinal Matrix	brain
20	chr15:78740800-78748200	Weak transcription	Fetal Muscle Trunk	muscle
21	chr15:78741000-78747600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr15:78741200-78747000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr15:78741200-78747000	Weak transcription	Fetal Muscle Leg	muscle
24	chr15:78741200-78755400	Weak transcription	Fetal Stomach	stomach
25	chr15:78741200-78781800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr15:78741800-78747400	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr15:78742000-78747200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr15:78742000-78747200	Weak transcription	Brain Cingulate Gyrus	brain
29	chr15:78742000-78747600	Weak transcription	Fetal Lung	lung
30	chr15:78742000-78749000	Weak transcription	NH-A	brain
31	chr15:78742000-78753000	Weak transcription	Dnd41	blood
32	chr15:78742000-78753400	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr15:78742200-78747000	Weak transcription	Fetal Thymus	thymus
34	chr15:78742200-78748200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr15:78742400-78747200	Weak transcription	Fetal Heart	heart
36	chr15:78742400-78747400	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr15:78742600-78750400	Weak transcription	HepG2	liver
38	chr15:78742800-78747400	Weak transcription	Stomach Smooth Muscle	stomach
39	chr15:78742800-78747400	Weak transcription	NHLF	lung
40	chr15:78742800-78747600	Weak transcription	Brain Anterior Caudate	brain
41	chr15:78742800-78753200	Weak transcription	HUES64 Cell Line	embryonic stem cell
42	chr15:78743000-78747200	Weak transcription	Hela-S3	cervix
43	chr15:78743000-78747400	Weak transcription	Brain Substantia Nigra	brain
44	chr15:78743000-78747600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr15:78743000-78749200	Weak transcription	NHEK	skin
46	chr15:78743000-78751000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr15:78743000-78752800	Weak transcription	Brain Angular Gyrus	brain
48	chr15:78743200-78747000	Weak transcription	Colonic Mucosa	Colon
49	chr15:78743200-78747000	Weak transcription	Lung	lung
50	chr15:78743200-78747000	Weak transcription	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links