Variant report

Variant	rs73463003
Chromosome Location	chr15:78773435-78773436
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:78773379-78773722	Hela-S3	cervix:	n/a	n/a
2	POLR2A	chr15:78773335-78773703	MCF-7	breast:	n/a	n/a
3	POLR2A	chr15:78773274-78773657	GM12891	blood:	n/a	n/a
4	POLR2A	chr15:78773384-78773595	K562	blood:	n/a	n/a
5	POLR2A	chr15:78773370-78773813	GM12878	blood:	n/a	n/a
6	POLR2A	chr15:78773407-78773669	H1-hESC	embryonic stem cell:	n/a	n/a
7	POLR2A	chr15:78773394-78773654	K562	blood:	n/a	n/a
8	POLR2A	chr15:78773420-78773439	H1-hESC	embryonic stem cell:	n/a	n/a
9	POLR2A	chr15:78773392-78773714	GM12891	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:78773415..78776394-chr15:78857535..78859504,2	MCF-7	breast:

Variant related genes	Relation type
IREB2	TF binding region
ENSG00000169684	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12914367	0.83[AMR][1000 genomes]
rs1394372	0.83[AMR][1000 genomes]
rs2102264	0.83[AMR][1000 genomes]
rs2938673	0.83[AMR][1000 genomes]
rs61157079	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73461579	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73461598	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
2	esv1806890	chr15:78744695-78786064	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78732200-78799400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr15:78741200-78781800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:78750400-78773800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr15:78751000-78793200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr15:78754000-78789400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr15:78754400-78787600	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr15:78754600-78773600	Strong transcription	A549	lung
8	chr15:78754600-78793400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr15:78754800-78793800	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr15:78755000-78787000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
11	chr15:78755000-78787000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr15:78755000-78793800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr15:78755000-78794400	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr15:78755200-78773800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr15:78755200-78779000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr15:78755200-78783800	Strong transcription	Primary B cells from peripheral blood	blood
17	chr15:78755200-78787000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr15:78755200-78792600	Strong transcription	Primary T helper cells fromperipheralblood	blood
19	chr15:78755200-78793400	Strong transcription	HUES6 Cell Line	embryonic stem cell
20	chr15:78755200-78793600	Strong transcription	Rectal Mucosa Donor 29	rectum
21	chr15:78755200-78793800	Strong transcription	Fetal Thymus	thymus
22	chr15:78755200-78794000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr15:78755200-78794600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr15:78755400-78779000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr15:78755400-78783200	Strong transcription	Rectal Mucosa Donor 31	rectum
26	chr15:78755400-78791400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr15:78755400-78791400	Strong transcription	Fetal Muscle Trunk	muscle
28	chr15:78755400-78791800	Strong transcription	Primary T cells fromperipheralblood	blood
29	chr15:78755400-78792600	Strong transcription	Fetal Muscle Leg	muscle
30	chr15:78755400-78793600	Strong transcription	Liver	Liver
31	chr15:78756000-78773600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr15:78756000-78783600	Strong transcription	Stomach Smooth Muscle	stomach
33	chr15:78756000-78792800	Strong transcription	Primary neutrophils fromperipheralblood	blood
34	chr15:78756000-78793600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
35	chr15:78757000-78789600	Weak transcription	Stomach Mucosa	stomach
36	chr15:78757800-78774400	Strong transcription	Adipose Nuclei	Adipose
37	chr15:78758400-78778200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr15:78758800-78776800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr15:78759000-78793000	Strong transcription	HUES64 Cell Line	embryonic stem cell
40	chr15:78759800-78793800	Strong transcription	HUES48 Cell Line	embryonic stem cell
41	chr15:78760800-78776200	Weak transcription	Gastric	stomach
42	chr15:78760800-78787000	Weak transcription	Aorta	Aorta
43	chr15:78761600-78776200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr15:78761800-78792000	Strong transcription	Duodenum Mucosa	Duodenum
45	chr15:78762200-78791600	Strong transcription	Fetal Intestine Large	intestine
46	chr15:78765200-78774400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr15:78766000-78799200	Weak transcription	Fetal Heart	heart
48	chr15:78766800-78776600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
49	chr15:78767800-78785800	Strong transcription	Fetal Lung	lung
50	chr15:78767800-78792600	Strong transcription	Primary T cells from cord blood	blood

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