Variant report

Variant	rs2104020
Chromosome Location	chr6:63424208-63424209
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 193 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:169)

rs_ID	r²[population]
rs10943102	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11756394	0.82[ASN][1000 genomes]
rs12176521	0.95[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1856123	1.00[ASN][1000 genomes]
rs2104021	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2145317	0.84[ASN][1000 genomes]
rs2180708	1.00[ASN][1000 genomes]
rs2752970	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2752971	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2752992	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2752993	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2752997	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2752999	1.00[ASN][1000 genomes]
rs2753015	1.00[ASN][1000 genomes]
rs2753016	1.00[ASN][1000 genomes]
rs2753017	1.00[ASN][1000 genomes]
rs2753018	1.00[ASN][1000 genomes]
rs2753019	1.00[ASN][1000 genomes]
rs2753020	1.00[ASN][1000 genomes]
rs2753021	1.00[ASN][1000 genomes]
rs2753022	0.92[ASN][1000 genomes]
rs2753023	0.92[ASN][1000 genomes]
rs2753024	0.92[ASN][1000 genomes]
rs2753027	1.00[ASN][1000 genomes]
rs2753034	1.00[ASN][1000 genomes]
rs2753035	1.00[ASN][1000 genomes]
rs2753036	1.00[ASN][1000 genomes]
rs2753037	1.00[ASN][1000 genomes]
rs2753038	1.00[ASN][1000 genomes]
rs2753039	0.92[ASN][1000 genomes]
rs2753040	1.00[ASN][1000 genomes]
rs2782374	0.94[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2782377	0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2782378	0.94[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2782380	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2782381	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2782382	0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2782383	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2786207	1.00[ASN][1000 genomes]
rs2786208	1.00[ASN][1000 genomes]
rs2786212	1.00[ASN][1000 genomes]
rs2843030	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2843031	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2843033	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2843034	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2843035	0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2843036	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2843037	0.94[AMR][1000 genomes]
rs2843039	0.94[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2843072	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2843092	0.92[ASN][1000 genomes]
rs2843093	1.00[ASN][1000 genomes]
rs2843094	1.00[ASN][1000 genomes]
rs2843108	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2843109	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2843110	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2843113	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2843114	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2843125	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs36086878	1.00[ASN][1000 genomes]
rs4392705	1.00[JPT][hapmap]
rs4395706	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4407697	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4422597	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4501408	0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4533972	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4577772	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4605864	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4610542	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4618502	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4710364	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56194914	1.00[ASN][1000 genomes]
rs62417165	1.00[ASN][1000 genomes]
rs62417167	1.00[ASN][1000 genomes]
rs62417168	1.00[ASN][1000 genomes]
rs62417223	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62418258	0.82[ASN][1000 genomes]
rs62418259	0.82[ASN][1000 genomes]
rs62419062	0.82[ASN][1000 genomes]
rs62419063	0.82[ASN][1000 genomes]
rs62419096	0.82[ASN][1000 genomes]
rs62419109	0.82[ASN][1000 genomes]
rs62419110	0.82[ASN][1000 genomes]
rs62419111	0.82[ASN][1000 genomes]
rs62419112	0.82[ASN][1000 genomes]
rs62419114	0.82[ASN][1000 genomes]
rs62419115	0.82[ASN][1000 genomes]
rs62419116	0.82[ASN][1000 genomes]
rs6453757	1.00[ASN][1000 genomes]
rs6903488	1.00[ASN][1000 genomes]
rs6903547	1.00[ASN][1000 genomes]
rs6908342	1.00[ASN][1000 genomes]
rs6912705	1.00[ASN][1000 genomes]
rs6915974	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6918509	1.00[ASN][1000 genomes]
rs6920681	1.00[ASN][1000 genomes]
rs6923059	1.00[ASN][1000 genomes]
rs6924633	0.82[ASN][1000 genomes]
rs6927290	1.00[ASN][1000 genomes]
rs6928483	1.00[ASN][1000 genomes]
rs6932146	0.91[ASN][1000 genomes]
rs6932304	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6934076	1.00[ASN][1000 genomes]
rs6935062	1.00[ASN][1000 genomes]
rs6935263	0.82[ASN][1000 genomes]
rs6936086	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6938635	1.00[ASN][1000 genomes]
rs6938996	1.00[ASN][1000 genomes]
rs6939707	1.00[ASN][1000 genomes]
rs6941041	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6941418	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73493565	1.00[ASN][1000 genomes]
rs73493571	1.00[ASN][1000 genomes]
rs73493573	1.00[ASN][1000 genomes]
rs73493576	0.84[ASN][1000 genomes]
rs73495596	1.00[ASN][1000 genomes]
rs73759617	1.00[ASN][1000 genomes]
rs7747153	1.00[ASN][1000 genomes]
rs9293968	1.00[ASN][1000 genomes]
rs9341416	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9343025	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9343057	1.00[JPT][hapmap];0.93[YRI][hapmap]
rs9343058	1.00[JPT][hapmap];0.89[YRI][hapmap]
rs9350492	0.94[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9351985	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9352016	1.00[JPT][hapmap];0.86[YRI][hapmap]
rs9352018	1.00[JPT][hapmap];0.90[YRI][hapmap]
rs9352019	1.00[JPT][hapmap];0.90[YRI][hapmap]
rs9352020	1.00[JPT][hapmap]
rs9443043	1.00[ASN][1000 genomes]
rs9443044	1.00[ASN][1000 genomes]
rs9443046	1.00[ASN][1000 genomes]
rs9443049	0.92[ASN][1000 genomes]
rs9443050	1.00[ASN][1000 genomes]
rs9443051	1.00[ASN][1000 genomes]
rs9443052	1.00[ASN][1000 genomes]
rs9443055	1.00[ASN][1000 genomes]
rs9443066	1.00[ASN][1000 genomes]
rs9443085	1.00[ASN][1000 genomes]
rs9443120	1.00[ASN][1000 genomes]
rs9443147	1.00[ASN][1000 genomes]
rs9447203	1.00[ASN][1000 genomes]
rs9447204	1.00[ASN][1000 genomes]
rs9447213	1.00[ASN][1000 genomes]
rs9447216	1.00[ASN][1000 genomes]
rs9447218	1.00[ASN][1000 genomes]
rs9447230	1.00[ASN][1000 genomes]
rs9447234	1.00[ASN][1000 genomes]
rs9447235	1.00[ASN][1000 genomes]
rs9447237	0.84[ASN][1000 genomes]
rs9447243	1.00[ASN][1000 genomes]
rs9447249	1.00[ASN][1000 genomes]
rs9447250	1.00[ASN][1000 genomes]
rs9447251	1.00[ASN][1000 genomes]
rs9447253	1.00[ASN][1000 genomes]
rs9447256	1.00[ASN][1000 genomes]
rs9447257	1.00[ASN][1000 genomes]
rs9447258	1.00[ASN][1000 genomes]
rs9447260	1.00[ASN][1000 genomes]
rs9447270	1.00[ASN][1000 genomes]
rs9447272	1.00[ASN][1000 genomes]
rs9447274	1.00[ASN][1000 genomes]
rs9447279	1.00[ASN][1000 genomes]
rs9447363	1.00[ASN][1000 genomes]
rs9447429	1.00[ASN][1000 genomes]
rs9447430	1.00[ASN][1000 genomes]
rs9447449	1.00[ASN][1000 genomes]
rs9447457	0.82[ASN][1000 genomes]
rs957453	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:24 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532025	chr6:62944349-63571677	Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1029503	chr6:63033365-63698355	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv532026	chr6:63085396-63698477	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv917014	chr6:63085410-63698365	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv885967	chr6:63152724-63605221	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv885968	chr6:63199731-63585140	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv885969	chr6:63223191-63496191	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv885970	chr6:63241352-63496191	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv885971	chr6:63241352-63605221	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	nsv885972	chr6:63241352-63615339	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
11	nsv885973	chr6:63241352-63630759	Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
12	nsv885974	chr6:63241352-63672200	ZNF genes & repeats Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
13	nsv1019831	chr6:63279677-64230736	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
14	nsv603352	chr6:63286366-63596112	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
15	nsv885975	chr6:63309588-63585140	Active TSS Enhancers ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
16	nsv885976	chr6:63330596-63496191	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
17	nsv885977	chr6:63330596-63592881	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
18	nsv885978	chr6:63330596-63605221	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
19	esv2761031	chr6:63365565-63440532	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
20	nsv470821	chr6:63380160-63529431	Weak transcription Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Strong transcription	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
21	nsv885979	chr6:63380661-63753657	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
22	esv3337222	chr6:63384042-63424380	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
23	nsv538269	chr6:63402290-63450352	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
24	nsv1030006	chr6:63402290-63464276	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:63423400-63425400	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr6:63423800-63425200	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr6:63423800-63425400	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr6:63424000-63424400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
5	chr6:63424000-63424400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:63424000-63424400	Enhancers	Psoas Muscle	Psoas
7	chr6:63424000-63424600	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr6:63424000-63424600	Enhancers	H1 Cell Line	embryonic stem cell
9	chr6:63424200-63425200	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr6:63424200-63425200	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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