Variant report

Variant	rs62419096
Chromosome Location	chr6:63301322-63301323
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 123 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:105)

rs_ID	r²[population]
rs10943102	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11756394	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12176521	0.83[EUR][1000 genomes]
rs1856123	0.82[ASN][1000 genomes]
rs2104020	0.82[ASN][1000 genomes]
rs2104021	0.82[ASN][1000 genomes]
rs2180708	0.82[ASN][1000 genomes]
rs2752970	0.82[ASN][1000 genomes]
rs2752971	0.82[ASN][1000 genomes]
rs2752992	0.82[ASN][1000 genomes]
rs2752993	0.82[ASN][1000 genomes]
rs2752997	0.82[ASN][1000 genomes]
rs2752999	0.82[ASN][1000 genomes]
rs2753015	0.82[ASN][1000 genomes]
rs2753016	0.82[ASN][1000 genomes]
rs2753017	0.82[ASN][1000 genomes]
rs2753018	0.82[ASN][1000 genomes]
rs2753019	0.82[ASN][1000 genomes]
rs2753020	0.82[ASN][1000 genomes]
rs2753021	0.82[ASN][1000 genomes]
rs2753027	0.82[ASN][1000 genomes]
rs2753034	0.82[ASN][1000 genomes]
rs2753035	0.82[ASN][1000 genomes]
rs2753036	0.82[ASN][1000 genomes]
rs2753037	0.82[ASN][1000 genomes]
rs2753038	0.82[ASN][1000 genomes]
rs2753040	0.82[ASN][1000 genomes]
rs2782374	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2782377	0.89[EUR][1000 genomes]
rs2782378	0.86[EUR][1000 genomes]
rs2782380	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2782381	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2782382	0.89[EUR][1000 genomes]
rs2782383	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2786207	0.82[ASN][1000 genomes]
rs2786208	0.82[ASN][1000 genomes]
rs2786212	0.82[ASN][1000 genomes]
rs2843030	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2843031	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2843033	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2843034	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2843035	0.89[EUR][1000 genomes]
rs2843036	0.82[ASN][1000 genomes]
rs2843037	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2843039	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2843072	0.82[ASN][1000 genomes]
rs2843093	0.82[ASN][1000 genomes]
rs2843094	0.82[ASN][1000 genomes]
rs2843108	0.82[ASN][1000 genomes]
rs2843109	0.82[ASN][1000 genomes]
rs2843110	0.82[ASN][1000 genomes]
rs2843114	0.82[ASN][1000 genomes]
rs2843125	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4395706	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4407697	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4422597	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4501408	0.86[EUR][1000 genomes]
rs4533972	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4577772	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4605864	0.83[EUR][1000 genomes]
rs4610542	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4618502	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4710364	0.82[ASN][1000 genomes]
rs56194914	0.82[ASN][1000 genomes]
rs62417165	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62417167	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62417168	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62417223	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs62418213	1.00[AMR][1000 genomes]
rs62418216	1.00[AMR][1000 genomes]
rs62418218	1.00[AMR][1000 genomes]
rs62418256	1.00[AMR][1000 genomes]
rs62418257	1.00[AMR][1000 genomes]
rs62418258	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62418259	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62419062	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62419063	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62419097	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62419109	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62419110	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62419111	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62419112	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62419113	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62419114	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62419115	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62419116	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6453757	0.82[ASN][1000 genomes]
rs6912705	0.82[ASN][1000 genomes]
rs6915974	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6924633	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6932304	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6935062	0.82[ASN][1000 genomes]
rs6936086	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6941041	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6941418	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7747153	0.82[ASN][1000 genomes]
rs9293968	0.82[ASN][1000 genomes]
rs9341416	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9343025	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9350492	0.89[EUR][1000 genomes]
rs9351985	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9447203	0.82[ASN][1000 genomes]
rs9447204	0.82[ASN][1000 genomes]
rs9447213	0.82[ASN][1000 genomes]
rs9689019	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017249	chr6:62906813-63317382	Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1020677	chr6:62911584-63309663	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv532025	chr6:62944349-63571677	Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1029503	chr6:63033365-63698355	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv532026	chr6:63085396-63698477	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv917014	chr6:63085410-63698365	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv885967	chr6:63152724-63605221	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv885968	chr6:63199731-63585140	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv1019784	chr6:63211479-63348695	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv885969	chr6:63223191-63496191	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	nsv885970	chr6:63241352-63496191	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
12	nsv885971	chr6:63241352-63605221	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
13	nsv885972	chr6:63241352-63615339	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
14	nsv885973	chr6:63241352-63630759	Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
15	nsv885974	chr6:63241352-63672200	ZNF genes & repeats Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
16	nsv1031787	chr6:63273240-63370651	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
17	nsv1019831	chr6:63279677-64230736	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
18	nsv603352	chr6:63286366-63596112	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:63298000-63304800	Weak transcription	Gastric	stomach

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