Variant report

Variant	rs2104690
Chromosome Location	chr9:93181032-93181033
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10739984	0.82[ASN][1000 genomes]
rs1365368	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2114345	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2114346	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4744434	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6479594	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6479602	0.81[AMR][1000 genomes]
rs7037348	0.81[AMR][1000 genomes]
rs7873224	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs890427	0.81[AMR][1000 genomes]
rs981129	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041278	chr9:92965701-93560454	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv482748	chr9:93123377-93279526	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv893565	chr9:93130796-93392332	Genic enhancers Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	esv3483705	chr9:93162382-93194535	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3483706	chr9:93162396-93194531	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93176200-93181600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr9:93180400-93183200	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr9:93180600-93181200	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr9:93180600-93181400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
5	chr9:93180800-93181200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr9:93180800-93181600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr9:93180800-93182000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr9:93180800-93182200	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr9:93180800-93182200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr9:93180800-93183600	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr9:93181000-93181200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr9:93181000-93182000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr9:93181000-93182000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr9:93181000-93182200	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr9:93181000-93184200	Enhancers	Fetal Stomach	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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