Variant report
| Variant | rs2108722 |
|---|---|
| Chromosome Location | chr7:39520306-39520307 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:39515006..39518001-chr7:39520059..39523009,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10232552 | 0.84[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs10242113 | 0.82[JPT][hapmap] |
| rs10261831 | 0.82[JPT][hapmap] |
| rs2024106 | 0.92[ASN][1000 genomes] |
| rs2073542 | 0.82[JPT][hapmap] |
| rs2073543 | 0.82[JPT][hapmap] |
| rs2237369 | 0.82[JPT][hapmap] |
| rs2237373 | 0.82[JPT][hapmap] |
| rs2237374 | 0.84[JPT][hapmap] |
| rs2237390 | 0.82[JPT][hapmap] |
| rs2299127 | 0.82[JPT][hapmap] |
| rs2299128 | 0.82[JPT][hapmap] |
| rs2302122 | 0.82[JPT][hapmap] |
| rs2302125 | 0.82[JPT][hapmap] |
| rs2329395 | 0.93[ASN][1000 genomes] |
| rs2876838 | 0.81[JPT][hapmap] |
| rs34599091 | 0.82[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs35234861 | 0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs6962246 | 0.83[ASN][1000 genomes] |
| rs740510 | 0.86[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes] |
| rs887015 | 0.82[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1021180 | chr7:39424988-39642261 | Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 2 | nsv1026951 | chr7:39429036-39642261 | Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 3 | nsv966782 | chr7:39454992-39581886 | Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv1018430 | chr7:39455497-39643569 | Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 5 | esv1793209 | chr7:39509401-39523947 | Enhancers Weak transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:39520200-39520600 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
