Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10232552	0.84[ASN][1000 genomes]
rs10242113	0.84[CEU][hapmap]
rs10261831	0.91[CEU][hapmap]
rs2024106	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2073542	0.84[CEU][hapmap]
rs2073543	0.82[CEU][hapmap]
rs2108719	0.82[CEU][hapmap]
rs2108722	0.93[ASN][1000 genomes]
rs2237369	0.84[CEU][hapmap]
rs2237373	0.84[CEU][hapmap]
rs2237374	0.84[CEU][hapmap]
rs2282917	0.82[CEU][hapmap]
rs2282918	0.82[CEU][hapmap]
rs2302122	0.82[CEU][hapmap]
rs2302125	0.82[CEU][hapmap]
rs2876838	0.84[CEU][hapmap]
rs34599091	0.87[ASN][1000 genomes]
rs35234861	0.86[ASN][1000 genomes]
rs740510	0.82[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs887015	0.84[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021180	chr7:39424988-39642261	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1026951	chr7:39429036-39642261	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv966782	chr7:39454992-39581886	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1018430	chr7:39455497-39643569	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39505000-39512800	Weak transcription	Fetal Kidney	kidney
2	chr7:39507800-39508600	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr7:39507800-39508600	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr7:39507800-39508600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr7:39507800-39509000	Enhancers	Primary hematopoietic stem cells	blood
6	chr7:39507800-39509000	Enhancers	Dnd41	blood
7	chr7:39508000-39508800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr7:39508400-39508800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr7:39508400-39508800	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr7:39508400-39508800	Enhancers	Fetal Muscle Leg	muscle
11	chr7:39508400-39508800	Enhancers	Fetal Thymus	thymus

Quick Search: