Variant report

Variant	rs2110081
Chromosome Location	chr12:8971742-8971743
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr12:8971703-8972401	H1-hESC	embryonic stem cell:	n/a	n/a
2	YY1	chr12:8971599-8971914	H1-hESC	embryonic stem cell:	n/a	chr12:8971753-8971765
3	YY1	chr12:8971611-8971883	H1-hESC	embryonic stem cell:	n/a	chr12:8971753-8971765
4	POLR2A	chr12:8971669-8972458	H1-hESC	embryonic stem cell:	n/a	n/a
5	SP1	chr12:8971725-8972448	H1-hESC	embryonic stem cell:	n/a	chr12:8972043-8972054
6	E2F6	chr12:8971723-8972546	H1-hESC	embryonic stem cell:	n/a	n/a
7	POLR2A	chr12:8971572-8972474	H1-hESC	embryonic stem cell:	n/a	n/a
8	POLR2A	chr12:8971605-8971916	H1-hESC	embryonic stem cell:	n/a	n/a
9	TCF12	chr12:8971721-8971957	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:8966691..8968770-chr12:8970773..8972791,2	K562	blood:

Variant related genes	Relation type
A2ML1	TF binding region

rs_ID	r²[population]
rs2110080	0.84[ASN][1000 genomes]
rs2377592	0.91[ASN][1000 genomes]
rs2908467	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7967497	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:8960000-8972000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr12:8966800-8975600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr12:8967000-8972000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr12:8967000-8975000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr12:8967200-8971800	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr12:8967200-8972000	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr12:8967800-8974000	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr12:8968200-8972000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr12:8969800-8975600	Enhancers	Placenta	Placenta
10	chr12:8970000-8972400	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr12:8970000-8972400	Weak transcription	Primary hematopoietic stem cells	blood
12	chr12:8970200-8975600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr12:8970400-8971800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr12:8970600-8972000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr12:8970600-8972000	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr12:8970600-8973600	Weak transcription	Esophagus	oesophagus
17	chr12:8970800-8972000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr12:8970800-8972000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr12:8970800-8972000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr12:8970800-8975600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr12:8970800-8975800	Weak transcription	K562	blood
22	chr12:8971400-8972000	Enhancers	H1 Cell Line	embryonic stem cell
23	chr12:8971400-8974000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr12:8971600-8971800	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr12:8971600-8972000	Active TSS	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links