Variant report

Variant	rs2908467
Chromosome Location	chr12:8968356-8968357
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2110081	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2377592	0.82[EUR][1000 genomes]
rs7967497	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7975731	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34096	chr12:8927520-8968810	Genic enhancers Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:8960000-8972000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr12:8961400-8969200	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr12:8963000-8970200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr12:8965800-8968400	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr12:8966400-8969200	Enhancers	K562	blood
6	chr12:8966800-8968400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr12:8966800-8975600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr12:8967000-8972000	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr12:8967000-8975000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr12:8967200-8969000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr12:8967200-8969800	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr12:8967200-8969800	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr12:8967200-8971800	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr12:8967200-8972000	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr12:8967400-8971400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr12:8967800-8974000	Enhancers	Primary neutrophils fromperipheralblood	blood
17	chr12:8968000-8968600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr12:8968200-8972000	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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