Variant report

Variant	rs7967497
Chromosome Location	chr12:8970652-8970653
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2110080	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2110081	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2377592	0.90[ASN][1000 genomes]
rs2908467	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2969093	0.82[JPT][hapmap]
rs7975731	0.80[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7967497	KLRD1	cis	cerebellum	SCAN
rs7967497	GNB3	cis	cerebellum	SCAN

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:8960000-8972000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr12:8966800-8975600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr12:8967000-8972000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr12:8967000-8975000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr12:8967200-8971800	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr12:8967200-8972000	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr12:8967400-8971400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr12:8967800-8974000	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr12:8968200-8972000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr12:8968600-8970800	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr12:8969400-8970800	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr12:8969800-8975600	Enhancers	Placenta	Placenta
13	chr12:8970000-8970800	Enhancers	K562	blood
14	chr12:8970000-8972400	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr12:8970000-8972400	Weak transcription	Primary hematopoietic stem cells	blood
16	chr12:8970200-8970800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr12:8970200-8970800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr12:8970200-8970800	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr12:8970200-8970800	Enhancers	Fetal Thymus	thymus
20	chr12:8970200-8970800	Enhancers	HSMMtube	muscle
21	chr12:8970200-8971400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr12:8970200-8975600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr12:8970400-8971600	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr12:8970400-8971800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr12:8970600-8971400	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr12:8970600-8972000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr12:8970600-8972000	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr12:8970600-8973600	Weak transcription	Esophagus	oesophagus

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