Variant report

Variant	rs2114867
Chromosome Location	chr3:141123638-141123639
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:141115976..141119088-chr3:141122527..141125160,3	MCF-7	breast:
2	chr3:141122791..141124629-chr3:141128045..141130082,2	K562	blood:
3	chr3:141123064..141125479-chr3:141137603..141140380,2	MCF-7	breast:
4	chr3:141089140..141091952-chr3:141123573..141125140,2	K562	blood:
5	chr3:141120608..141122904-chr3:141123337..141125352,2	K562	blood:

Variant related genes	Relation type
ENSG00000177311	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs13077048	0.86[ASN][1000 genomes]
rs1582874	0.94[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1991431	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs57345461	0.97[EUR][1000 genomes]
rs58473751	0.97[EUR][1000 genomes]
rs6785012	0.98[ASN][1000 genomes]
rs6808936	0.94[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs9846396	0.88[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs9853018	0.91[ASN][1000 genomes]
rs9856584	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829744	chr3:141016749-141189168	Genic enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141122000-141127600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:141122000-141128600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:141122000-141129200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr3:141122000-141130200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:141122000-141131800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr3:141122200-141126200	Genic enhancers	HSMM	muscle
7	chr3:141122200-141128800	Weak transcription	Fetal Thymus	thymus
8	chr3:141122200-141129400	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr3:141122400-141123800	Transcr. at gene 5' and 3'	Muscle Satellite Cultured Cells	--
10	chr3:141122400-141124600	Transcr. at gene 5' and 3'	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr3:141122400-141124800	Transcr. at gene 5' and 3'	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr3:141122400-141126000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr3:141122400-141126800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr3:141122400-141127000	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
15	chr3:141122400-141127800	Genic enhancers	Placenta	Placenta
16	chr3:141122600-141123800	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr3:141122600-141123800	Genic enhancers	Brain Inferior Temporal Lobe	brain
18	chr3:141122600-141123800	Genic enhancers	Fetal Muscle Leg	muscle
19	chr3:141122600-141123800	Transcr. at gene 5' and 3'	Rectal Mucosa Donor 29	rectum
20	chr3:141122600-141124200	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
21	chr3:141122600-141124400	Transcr. at gene 5' and 3'	HUVEC	blood vessel
22	chr3:141122600-141125000	Strong transcription	K562	blood
23	chr3:141122600-141125400	Genic enhancers	HMEC	breast
24	chr3:141122600-141125800	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr3:141122600-141128200	Strong transcription	Fetal Intestine Large	intestine
26	chr3:141122600-141130400	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr3:141122600-141130400	Genic enhancers	NH-A	brain
28	chr3:141122800-141123800	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
29	chr3:141122800-141123800	Genic enhancers	Brain Angular Gyrus	brain
30	chr3:141122800-141123800	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
31	chr3:141122800-141123800	Transcr. at gene 5' and 3'	Left Ventricle	heart
32	chr3:141122800-141123800	Genic enhancers	Lung	lung
33	chr3:141122800-141123800	Genic enhancers	Ovary	ovary
34	chr3:141122800-141123800	Enhancers	Right Atrium	heart
35	chr3:141122800-141123800	Genic enhancers	Small Intestine	intestine
36	chr3:141122800-141123800	Genic enhancers	HepG2	liver
37	chr3:141122800-141123800	Transcr. at gene 5' and 3'	NHDF-Ad	bronchial
38	chr3:141122800-141124000	Strong transcription	Primary T cells from cord blood	blood
39	chr3:141122800-141124000	Genic enhancers	Brain Hippocampus Middle	brain
40	chr3:141122800-141124600	Transcr. at gene 5' and 3'	NHEK	skin
41	chr3:141122800-141124800	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr3:141122800-141125000	Genic enhancers	Brain Anterior Caudate	brain
43	chr3:141122800-141125200	Strong transcription	Liver	Liver
44	chr3:141122800-141125600	Genic enhancers	Hela-S3	cervix
45	chr3:141122800-141126200	Strong transcription	Primary B cells from peripheral blood	blood
46	chr3:141122800-141126600	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
47	chr3:141122800-141127000	Strong transcription	Primary monocytes fromperipheralblood	blood
48	chr3:141122800-141127600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr3:141122800-141129400	Enhancers	Fetal Heart	heart
50	chr3:141123000-141123800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links