Variant report

Variant	rs57345461
Chromosome Location	chr3:141126825-141126826
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:141125595..141129103-chr3:141133581..141136725,3	K562	blood:
2	chr3:141126713..141129325-chr3:141173577..141175312,2	MCF-7	breast:
3	chr3:141126444..141129026-chr3:141149280..141150902,2	K562	blood:
4	chr3:141126040..141127652-chr3:141131247..141133290,2	MCF-7	breast:
5	chr3:141119734..141124291-chr3:141125562..141133374,8	K562	blood:

Variant related genes	Relation type
ENSG00000177311	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs13068733	1.00[ASN][1000 genomes]
rs1344672	1.00[ASN][1000 genomes]
rs1344674	1.00[ASN][1000 genomes]
rs2114867	0.97[EUR][1000 genomes]
rs2871960	1.00[ASN][1000 genomes]
rs4683606	1.00[ASN][1000 genomes]
rs58473751	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6440003	0.95[ASN][1000 genomes]
rs6440006	0.97[ASN][1000 genomes]
rs6763927	0.96[ASN][1000 genomes]
rs6763931	0.95[ASN][1000 genomes]
rs6764769	0.95[ASN][1000 genomes]
rs724016	0.98[ASN][1000 genomes]
rs7624084	0.89[ASN][1000 genomes]
rs7625643	0.86[ASN][1000 genomes]
rs7632381	0.97[ASN][1000 genomes]
rs7650602	0.89[ASN][1000 genomes]
rs9856584	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829744	chr3:141016749-141189168	Genic enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141122000-141127600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:141122000-141128600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:141122000-141129200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr3:141122000-141130200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:141122000-141131800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr3:141122200-141128800	Weak transcription	Fetal Thymus	thymus
7	chr3:141122200-141129400	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr3:141122400-141127000	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
9	chr3:141122400-141127800	Genic enhancers	Placenta	Placenta
10	chr3:141122600-141128200	Strong transcription	Fetal Intestine Large	intestine
11	chr3:141122600-141130400	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr3:141122600-141130400	Genic enhancers	NH-A	brain
13	chr3:141122800-141127000	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr3:141122800-141127600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr3:141122800-141129400	Enhancers	Fetal Heart	heart
16	chr3:141123000-141127000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr3:141123000-141127000	Strong transcription	Fetal Brain Male	brain
18	chr3:141123000-141127200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr3:141123000-141127800	Strong transcription	Monocytes-CD14+_RO01746	blood
20	chr3:141123000-141128000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr3:141123000-141128200	Genic enhancers	A549	lung
22	chr3:141123200-141129200	Genic enhancers	Primary T cells fromperipheralblood	blood
23	chr3:141123200-141130400	Genic enhancers	Osteobl	bone
24	chr3:141123200-141130600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr3:141123200-141130600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr3:141123400-141127600	Strong transcription	Fetal Stomach	stomach
27	chr3:141123600-141127000	Strong transcription	Fetal Lung	lung
28	chr3:141123600-141127200	Strong transcription	Brain Cingulate Gyrus	brain
29	chr3:141123600-141128600	Enhancers	Placenta Amnion	Placenta Amnion
30	chr3:141123800-141127000	Strong transcription	Fetal Muscle Leg	muscle
31	chr3:141123800-141127200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr3:141123800-141127600	Weak transcription	Gastric	stomach
33	chr3:141123800-141128400	Weak transcription	Aorta	Aorta
34	chr3:141123800-141128400	Weak transcription	Psoas Muscle	Psoas
35	chr3:141123800-141128400	Weak transcription	Spleen	Spleen
36	chr3:141123800-141128600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr3:141123800-141128800	Weak transcription	Esophagus	oesophagus
38	chr3:141123800-141128800	Strong transcription	Fetal Muscle Trunk	muscle
39	chr3:141123800-141129200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr3:141123800-141129200	Weak transcription	Fetal Brain Female	brain
41	chr3:141123800-141129400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr3:141123800-141130200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr3:141123800-141131400	Weak transcription	Thymus	Thymus
44	chr3:141124000-141127800	Strong transcription	Rectal Mucosa Donor 29	rectum
45	chr3:141124000-141129400	Weak transcription	Primary T cells from cord blood	blood
46	chr3:141124000-141131000	Weak transcription	Primary B cells from cord blood	blood
47	chr3:141124200-141128600	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr3:141124400-141127200	Genic enhancers	HUVEC	blood vessel
49	chr3:141124400-141129200	Genic enhancers	NHLF	lung
50	chr3:141124600-141127000	Genic enhancers	NHEK	skin

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