Variant report

Variant	rs7625643
Chromosome Location	chr3:141150026-141150027
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs13068733	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13077048	0.81[EUR][1000 genomes]
rs1344672	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1344674	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1582874	0.87[EUR][1000 genomes]
rs1991431	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2871960	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4683605	0.84[EUR][1000 genomes]
rs4683606	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57345461	0.86[ASN][1000 genomes]
rs58473751	0.86[ASN][1000 genomes]
rs6440003	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6440006	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6763927	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6763931	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6764769	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6785012	0.86[EUR][1000 genomes]
rs6808936	0.86[EUR][1000 genomes]
rs724016	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7632381	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7650602	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9846396	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9853018	0.84[EUR][1000 genomes]
rs9856584	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829744	chr3:141016749-141189168	Genic enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141131800-141161200	Weak transcription	Thymus	Thymus
2	chr3:141132200-141171000	Weak transcription	Primary B cells from cord blood	blood
3	chr3:141133800-141158400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:141133800-141158400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr3:141134000-141161600	Weak transcription	Fetal Brain Male	brain
6	chr3:141134200-141161600	Weak transcription	Primary T cells from cord blood	blood
7	chr3:141135600-141160200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr3:141138000-141152000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr3:141140800-141159200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr3:141141400-141154800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr3:141143000-141150800	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr3:141143400-141151600	Enhancers	Fetal Heart	heart
13	chr3:141145000-141154800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr3:141145000-141160000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr3:141145200-141150400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr3:141145200-141151200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr3:141145400-141152600	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr3:141145400-141161200	Weak transcription	Fetal Brain Female	brain
19	chr3:141145400-141161800	Weak transcription	Esophagus	oesophagus
20	chr3:141145600-141151200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr3:141145600-141151800	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr3:141145800-141151400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr3:141145800-141155800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr3:141145800-141161600	Weak transcription	Primary neutrophils fromperipheralblood	blood
25	chr3:141146000-141150200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr3:141146000-141150400	Weak transcription	K562	blood
27	chr3:141146000-141151200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr3:141146000-141151800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr3:141146000-141160000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr3:141146000-141160000	Weak transcription	Primary monocytes fromperipheralblood	blood
31	chr3:141146000-141160000	Weak transcription	Primary hematopoietic stem cells	blood
32	chr3:141146200-141160000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr3:141146400-141150400	Strong transcription	Fetal Intestine Small	intestine
34	chr3:141146400-141150600	Weak transcription	Fetal Kidney	kidney
35	chr3:141146400-141151400	Strong transcription	Rectal Mucosa Donor 31	rectum
36	chr3:141146400-141153000	Weak transcription	Small Intestine	intestine
37	chr3:141146400-141155000	Weak transcription	Colonic Mucosa	Colon
38	chr3:141146600-141150400	Strong transcription	Duodenum Mucosa	Duodenum
39	chr3:141146600-141150400	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr3:141146600-141157600	Weak transcription	HSMMtube	muscle
41	chr3:141146600-141160000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr3:141147000-141150400	Enhancers	Brain Cingulate Gyrus	brain
43	chr3:141147000-141151200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr3:141147000-141161200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr3:141147000-141161200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr3:141147200-141150400	Weak transcription	HSMM	muscle
47	chr3:141147200-141153200	Weak transcription	Ovary	ovary
48	chr3:141147400-141150200	Weak transcription	Hela-S3	cervix
49	chr3:141147400-141150600	Strong transcription	Osteobl	bone
50	chr3:141147400-141151600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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