Variant report

Variant	rs13068733
Chromosome Location	chr3:141118028-141118029
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:6)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:6 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RUNX3	chr3:141117997-141118628	GM12878	blood:	n/a	n/a
2	EBF1	chr3:141117965-141118487	GM12878	blood:	n/a	n/a
3	ZNF384	chr3:141118012-141119151	GM12878	blood:	n/a	n/a
4	NFIC	chr3:141118000-141118723	GM12878	blood:	n/a	n/a
5	MTA3	chr3:141117985-141118628	GM12878	blood:	n/a	n/a
6	ATF2	chr3:141117979-141118459	GM12878	blood:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:141117835..141119368-chr3:141128944..141131401,2	MCF-7	breast:
2	chr3:141115976..141119088-chr3:141122527..141125160,3	MCF-7	breast:
3	chr3:141107718..141109418-chr3:141117373..141119105,2	K562	blood:
4	chr3:141078683..141080733-chr3:141115929..141118678,2	MCF-7	breast:
5	chr3:141116150..141118780-chr3:141120095..141122979,2	K562	blood:

No data

Variant related genes	Relation type
ZBTB38	TF binding region
ENSG00000177311	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs13077048	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1344672	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1344674	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1582874	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1991431	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2871960	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4683605	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4683606	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57345461	1.00[ASN][1000 genomes]
rs58473751	1.00[ASN][1000 genomes]
rs6440003	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6440006	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6763927	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6763931	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6764769	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6785012	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6808936	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs724016	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7624084	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7625643	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7632381	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7650602	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9846396	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9853018	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9856584	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829744	chr3:141016749-141189168	Genic enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141106000-141119000	Weak transcription	Colonic Mucosa	Colon
2	chr3:141106800-141119200	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr3:141108400-141118200	Weak transcription	Stomach Smooth Muscle	stomach
4	chr3:141108400-141118600	Weak transcription	Small Intestine	intestine
5	chr3:141111600-141120800	Weak transcription	Gastric	stomach
6	chr3:141112000-141119000	Weak transcription	Fetal Heart	heart
7	chr3:141112400-141120000	Weak transcription	Brain Germinal Matrix	brain
8	chr3:141112600-141120400	Weak transcription	Fetal Stomach	stomach
9	chr3:141112600-141120600	Weak transcription	Lung	lung
10	chr3:141112800-141119200	Weak transcription	Brain Cingulate Gyrus	brain
11	chr3:141112800-141120400	Weak transcription	Hela-S3	cervix
12	chr3:141112800-141120600	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr3:141112800-141120600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr3:141112800-141120800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr3:141113200-141119600	Strong transcription	HSMM	muscle
16	chr3:141113400-141118200	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr3:141113800-141118600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr3:141114000-141118200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr3:141116000-141118200	Weak transcription	Adipose Nuclei	Adipose
20	chr3:141116000-141119200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr3:141116000-141119400	Weak transcription	Brain Angular Gyrus	brain
22	chr3:141116000-141120600	Weak transcription	Right Ventricle	heart
23	chr3:141116200-141118200	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr3:141116200-141119000	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr3:141116200-141119200	Weak transcription	Liver	Liver
26	chr3:141116200-141119200	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr3:141116200-141120600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr3:141116200-141120600	Weak transcription	Fetal Kidney	kidney
29	chr3:141116400-141118200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr3:141116400-141119200	Weak transcription	Brain Substantia Nigra	brain
31	chr3:141116400-141119200	Weak transcription	NHEK	skin
32	chr3:141116400-141119400	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr3:141116400-141119600	Weak transcription	Fetal Muscle Leg	muscle
34	chr3:141116400-141120400	Weak transcription	HSMMtube	muscle
35	chr3:141116400-141120600	Weak transcription	Fetal Brain Female	brain
36	chr3:141116400-141120600	Weak transcription	Fetal Muscle Trunk	muscle
37	chr3:141116400-141120800	Weak transcription	Placenta Amnion	Placenta Amnion
38	chr3:141116600-141118200	Weak transcription	Brain Hippocampus Middle	brain
39	chr3:141116600-141118200	Weak transcription	Rectal Mucosa Donor 29	rectum
40	chr3:141116600-141119200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr3:141116600-141119200	Weak transcription	Brain Anterior Caudate	brain
42	chr3:141116800-141118400	Weak transcription	Duodenum Mucosa	Duodenum
43	chr3:141116800-141118400	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr3:141116800-141118800	Weak transcription	Primary T helper cells fromperipheralblood	blood
45	chr3:141116800-141119000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr3:141116800-141119200	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr3:141116800-141119200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr3:141116800-141119200	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr3:141116800-141119400	Weak transcription	HMEC	breast
50	chr3:141116800-141120600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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