Variant report

Variant	rs211602
Chromosome Location	chr6:133708662-133708663
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs150532	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs172458	0.83[ASN][1000 genomes]
rs211598	0.85[CHD][hapmap]
rs211601	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs211604	1.00[CEU][hapmap];0.87[TSI][hapmap];0.85[EUR][1000 genomes]
rs211610	1.00[CEU][hapmap]
rs211611	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs211612	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs211616	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs211617	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs211619	1.00[CHB][hapmap];0.92[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs211620	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs211621	1.00[CHB][hapmap];0.85[CHD][hapmap];0.81[GIH][hapmap];0.83[ASN][1000 genomes]
rs211630	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs212802	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs212803	0.88[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs212804	0.83[ASN][1000 genomes]
rs212805	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs212807	0.92[ASN][1000 genomes]
rs212811	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs212813	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs296423	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs380367	0.85[CHD][hapmap]
rs9385646	0.87[ASN][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133684600-133717800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:133701800-133710000	Weak transcription	Psoas Muscle	Psoas
3	chr6:133703800-133709800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr6:133703800-133713200	Weak transcription	HSMMtube	muscle
5	chr6:133707200-133709800	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr6:133707600-133714400	Weak transcription	Hela-S3	cervix
7	chr6:133708400-133709000	Weak transcription	Brain Cingulate Gyrus	brain

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