Variant report

Variant	rs296423
Chromosome Location	chr6:133725828-133725829
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs150532	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs159425	0.94[CEU][hapmap];0.89[EUR][1000 genomes]
rs172458	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs211598	0.92[CHD][hapmap]
rs211601	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs211602	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs211611	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs211612	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs211616	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs211617	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs211619	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs211620	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs211621	1.00[CHB][hapmap];0.92[CHD][hapmap];0.91[ASN][1000 genomes]
rs212802	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs212803	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.83[MKK][hapmap];1.00[ASN][1000 genomes]
rs212804	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs212805	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs212807	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs212811	1.00[ASN][1000 genomes]
rs212813	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs296424	0.94[CEU][hapmap];0.82[MKK][hapmap];0.95[TSI][hapmap];0.90[EUR][1000 genomes]
rs296425	0.94[CEU][hapmap];0.83[MKK][hapmap];0.95[TSI][hapmap];0.90[EUR][1000 genomes]
rs380367	0.92[CHD][hapmap]
rs9385646	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133716000-133728600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr6:133718200-133728600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr6:133719800-133728200	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr6:133720200-133748400	Weak transcription	Hela-S3	cervix
5	chr6:133720400-133749600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr6:133723400-133728200	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr6:133723400-133728600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr6:133724000-133726000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr6:133725000-133726000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:133725400-133726000	Active TSS	Skeletal Muscle Male	skeletal muscle
11	chr6:133725600-133728600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr6:133725800-133726200	Active TSS	Psoas Muscle	Psoas
13	chr6:133725800-133726400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle

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