Variant report

Variant	rs212811
Chromosome Location	chr6:133712461-133712462
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs150532	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs172458	0.90[ASN][1000 genomes]
rs211601	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs211602	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs211611	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs211612	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs211616	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs211617	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs211619	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs211620	1.00[ASN][1000 genomes]
rs211621	0.91[ASN][1000 genomes]
rs212802	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs212803	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs212804	0.90[ASN][1000 genomes]
rs212805	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs212807	1.00[ASN][1000 genomes]
rs212813	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs296423	1.00[ASN][1000 genomes]
rs9385646	0.95[ASN][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133684600-133717800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:133703800-133713200	Weak transcription	HSMMtube	muscle
3	chr6:133707600-133714400	Weak transcription	Hela-S3	cervix
4	chr6:133709200-133712800	Weak transcription	Fetal Muscle Leg	muscle
5	chr6:133709200-133713600	Weak transcription	Brain Cingulate Gyrus	brain
6	chr6:133709800-133712600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr6:133709800-133719800	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr6:133710200-133712600	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr6:133710400-133712800	Weak transcription	Brain Substantia Nigra	brain
10	chr6:133710600-133716400	Weak transcription	Psoas Muscle	Psoas
11	chr6:133711200-133717400	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr6:133711600-133713000	Enhancers	Fetal Heart	heart
13	chr6:133712000-133714000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr6:133712200-133716200	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr6:133712400-133716000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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