Variant report

Variant	rs2116763
Chromosome Location	chr5:167522971-167522972
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10073793	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[MEX][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1036192	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1469678	0.85[CEU][hapmap];0.82[CHB][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1529682	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[MEX][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17069915	0.85[CEU][hapmap];1.00[CHB][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17531616	0.85[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];0.82[YRI][hapmap]
rs17550124	0.85[CEU][hapmap];0.82[CHB][hapmap];0.89[MEX][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2569053	0.85[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2617972	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[MEX][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3101759	0.89[CEU][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60534035	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62383423	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6555784	0.85[CEU][hapmap];0.82[CHB][hapmap];0.89[MEX][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7736530	0.82[CHB][hapmap];1.00[CHD][hapmap]
rs919739	0.85[CHB][hapmap]
rs968547	0.85[CEU][hapmap];1.00[CHB][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167513800-167536000	Weak transcription	NHDF-Ad	bronchial
2	chr5:167514000-167531200	Weak transcription	HSMMtube	muscle
3	chr5:167514200-167524400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr5:167514200-167531400	Weak transcription	HSMM	muscle
5	chr5:167516200-167538400	Weak transcription	HMEC	breast
6	chr5:167516600-167532000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr5:167517400-167529200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr5:167517400-167539400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr5:167517600-167523000	Strong transcription	NHEK	skin
10	chr5:167519200-167534800	Weak transcription	Esophagus	oesophagus
11	chr5:167520000-167524800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr5:167520600-167526200	Weak transcription	Fetal Heart	heart
13	chr5:167521200-167525200	Weak transcription	Fetal Kidney	kidney
14	chr5:167521600-167529400	Weak transcription	Fetal Lung	lung
15	chr5:167522000-167524800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr5:167522000-167525000	Weak transcription	Left Ventricle	heart
17	chr5:167522200-167523600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
18	chr5:167522400-167524600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr5:167522400-167530600	Weak transcription	Right Ventricle	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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