Variant report

Variant	rs17550124
Chromosome Location	chr5:167559743-167559744
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10073793	1.00[CEU][hapmap];0.82[CHB][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1036192	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1469678	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1529682	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17069915	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17531616	1.00[CHB][hapmap]
rs2116763	0.85[CEU][hapmap];0.82[CHB][hapmap];0.89[MEX][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2569053	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2617972	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3101759	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60534035	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62383423	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62383432	0.92[ASN][1000 genomes]
rs62383433	0.92[ASN][1000 genomes]
rs62383434	0.92[ASN][1000 genomes]
rs62383435	0.92[ASN][1000 genomes]
rs6555784	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7709145	1.00[JPT][hapmap];1.00[LWK][hapmap];0.92[ASN][1000 genomes]
rs7736194	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7736530	1.00[CHB][hapmap]
rs968547	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167542800-167564800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr5:167544800-167564400	Weak transcription	Fetal Lung	lung
3	chr5:167555600-167563800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr5:167555800-167563400	Weak transcription	Left Ventricle	heart
5	chr5:167555800-167576000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr5:167556000-167580400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr5:167556200-167563400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr5:167556200-167567000	Weak transcription	Right Ventricle	heart
9	chr5:167556600-167561800	Weak transcription	NHEK	skin
10	chr5:167557200-167567000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr5:167558000-167560000	Enhancers	HSMMtube	muscle
12	chr5:167558200-167559800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr5:167558200-167560000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr5:167558200-167560000	Enhancers	HSMM	muscle
15	chr5:167558800-167560000	Enhancers	Muscle Satellite Cultured Cells	--
16	chr5:167558800-167560400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr5:167558800-167565000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr5:167559000-167560000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr5:167559200-167560000	Enhancers	NH-A	brain

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