Variant report

Variant	rs62383434
Chromosome Location	chr5:167576862-167576863
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1469678	0.92[ASN][1000 genomes]
rs17550124	0.92[ASN][1000 genomes]
rs62383432	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62383433	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62383435	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6555784	0.92[ASN][1000 genomes]
rs7709145	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7736194	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167556000-167580400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:167560000-167592200	Weak transcription	HSMM	muscle
3	chr5:167563800-167580200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr5:167565000-167580000	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr5:167568400-167588400	Weak transcription	NHEK	skin
6	chr5:167573600-167582200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr5:167573600-167582600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr5:167574000-167577000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr5:167574600-167577000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr5:167575200-167579800	Weak transcription	Left Ventricle	heart
11	chr5:167575200-167580000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr5:167575200-167580000	Weak transcription	Right Ventricle	heart
13	chr5:167575200-167589400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr5:167575400-167579800	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr5:167575400-167580000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr5:167575400-167580200	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr5:167575400-167580200	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr5:167575600-167579800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr5:167575600-167580000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr5:167575800-167580400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr5:167576000-167577000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
22	chr5:167576200-167580000	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr5:167576400-167580600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr5:167576600-167579400	Weak transcription	HMEC	breast
25	chr5:167576600-167580400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr5:167576800-167586000	Weak transcription	Cortex derived primary cultured neurospheres	brain

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