Variant report

Variant	rs62383435
Chromosome Location	chr5:167580935-167580936
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1469678	0.92[ASN][1000 genomes]
rs17550124	0.92[ASN][1000 genomes]
rs62383432	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62383433	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62383434	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6555784	0.92[ASN][1000 genomes]
rs7709145	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7736194	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167560000-167592200	Weak transcription	HSMM	muscle
2	chr5:167568400-167588400	Weak transcription	NHEK	skin
3	chr5:167573600-167582200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr5:167573600-167582600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr5:167575200-167589400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:167576800-167586000	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr5:167579600-167581200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr5:167579800-167582000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr5:167579800-167582600	Enhancers	Left Ventricle	heart
10	chr5:167579800-167583800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr5:167579800-167586600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr5:167580000-167581000	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr5:167580000-167581000	Enhancers	Adipose Nuclei	Adipose
14	chr5:167580000-167581000	Enhancers	Right Ventricle	heart
15	chr5:167580000-167586400	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr5:167580200-167581000	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr5:167580200-167581000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr5:167580200-167581000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr5:167580400-167581000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr5:167580400-167581000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr5:167580400-167581000	Enhancers	Fetal Muscle Leg	muscle
22	chr5:167580600-167581000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
23	chr5:167580600-167581800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr5:167580600-167583800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr5:167580600-167586200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr5:167580600-167586400	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr5:167580800-167581600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr5:167580800-167581600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr5:167580800-167583400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr5:167580800-167586200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr5:167580800-167586400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr5:167580800-167592000	Weak transcription	HMEC	breast

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