Variant report

Variant	rs2117004
Chromosome Location	chr3:144180576-144180577
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs11928775	0.96[ASN][1000 genomes]
rs12490144	0.89[ASN][1000 genomes]
rs12491851	0.96[ASN][1000 genomes]
rs12493075	0.96[ASN][1000 genomes]
rs12494918	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12495279	0.96[ASN][1000 genomes]
rs13066453	0.92[ASN][1000 genomes]
rs1527238	0.92[ASN][1000 genomes]
rs1529752	0.97[ASN][1000 genomes]
rs1529753	0.97[ASN][1000 genomes]
rs1726522	0.82[ASN][1000 genomes]
rs4337676	0.94[ASN][1000 genomes]
rs4349542	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4398472	0.94[ASN][1000 genomes]
rs4408907	0.94[ASN][1000 genomes]
rs4479640	0.92[ASN][1000 genomes]
rs4544660	0.94[ASN][1000 genomes]
rs4568182	0.94[ASN][1000 genomes]
rs4594657	0.94[ASN][1000 genomes]
rs4681125	0.92[ASN][1000 genomes]
rs4681328	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4681331	0.94[ASN][1000 genomes]
rs4681342	0.92[ASN][1000 genomes]
rs6440258	0.93[ASN][1000 genomes]
rs6763327	0.96[ASN][1000 genomes]
rs6763662	0.96[ASN][1000 genomes]
rs6783056	0.83[ASN][1000 genomes]
rs6791653	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6799623	0.93[ASN][1000 genomes]
rs6800761	0.94[ASN][1000 genomes]
rs7611785	0.85[ASN][1000 genomes]
rs7613977	0.90[ASN][1000 genomes]
rs7614082	0.85[ASN][1000 genomes]
rs7614253	0.83[ASN][1000 genomes]
rs7615146	0.93[ASN][1000 genomes]
rs7616429	0.92[ASN][1000 genomes]
rs7620611	0.90[ASN][1000 genomes]
rs7626294	0.87[ASN][1000 genomes]
rs7628103	0.94[ASN][1000 genomes]
rs7634647	0.92[ASN][1000 genomes]
rs7637942	0.81[ASN][1000 genomes]
rs7648433	0.96[ASN][1000 genomes]
rs7650699	0.94[ASN][1000 genomes]
rs7652161	0.96[ASN][1000 genomes]
rs7653820	0.93[ASN][1000 genomes]
rs9829827	0.92[ASN][1000 genomes]
rs9833354	0.93[ASN][1000 genomes]
rs9840395	0.85[CEU][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap];0.85[TSI][hapmap];0.90[ASN][1000 genomes]
rs9857163	0.96[ASN][1000 genomes]
rs9857613	0.96[ASN][1000 genomes]
rs9866115	0.96[ASN][1000 genomes]
rs9866198	0.81[ASN][1000 genomes]
rs9866442	0.90[JPT][hapmap]
rs9870285	0.82[ASN][1000 genomes]
rs9873732	0.81[ASN][1000 genomes]
rs9878902	0.97[CHD][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap];0.88[TSI][hapmap];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532633	chr3:143802417-144440646	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1011685	chr3:143959237-144218424	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv536751	chr3:143959237-144218424	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv591928	chr3:144050897-144822081	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv591929	chr3:144123401-144188561	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv1012058	chr3:144139713-144183108	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv536752	chr3:144151900-144183108	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv591930	chr3:144152222-144180576	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	esv2756108	chr3:144177836-144301659	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:144177400-144181000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:144177400-144181200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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