Variant report

Variant	rs6783056
Chromosome Location	chr3:144274716-144274717
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10490827	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11928775	0.86[ASN][1000 genomes]
rs12491851	0.86[ASN][1000 genomes]
rs12493075	0.86[ASN][1000 genomes]
rs12494918	0.83[ASN][1000 genomes]
rs12495279	0.86[ASN][1000 genomes]
rs12631899	0.83[ASN][1000 genomes]
rs12632855	0.83[ASN][1000 genomes]
rs12639461	0.83[ASN][1000 genomes]
rs13066453	0.89[ASN][1000 genomes]
rs1527238	0.89[ASN][1000 genomes]
rs1529752	0.85[ASN][1000 genomes]
rs1529753	0.85[ASN][1000 genomes]
rs2117004	0.83[ASN][1000 genomes]
rs2222702	0.82[ASN][1000 genomes]
rs2575189	0.82[ASN][1000 genomes]
rs2694959	0.80[ASN][1000 genomes]
rs2717380	0.82[ASN][1000 genomes]
rs2717387	0.82[ASN][1000 genomes]
rs2717388	0.80[ASN][1000 genomes]
rs2717389	0.80[ASN][1000 genomes]
rs4337676	0.88[ASN][1000 genomes]
rs4349542	0.82[ASN][1000 genomes]
rs4398472	0.88[ASN][1000 genomes]
rs4408907	0.88[ASN][1000 genomes]
rs4479640	0.89[ASN][1000 genomes]
rs4544660	0.88[ASN][1000 genomes]
rs4568182	0.88[ASN][1000 genomes]
rs4594657	0.88[ASN][1000 genomes]
rs4681125	0.89[ASN][1000 genomes]
rs4681328	0.86[ASN][1000 genomes]
rs4681331	0.88[ASN][1000 genomes]
rs4681342	0.89[ASN][1000 genomes]
rs56096828	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56191622	0.84[EUR][1000 genomes]
rs56228220	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59900584	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61641065	0.84[EUR][1000 genomes]
rs6440258	0.89[ASN][1000 genomes]
rs6763327	0.86[ASN][1000 genomes]
rs6763662	0.86[ASN][1000 genomes]
rs6791653	0.83[ASN][1000 genomes]
rs6799623	0.89[ASN][1000 genomes]
rs6800761	0.88[ASN][1000 genomes]
rs721029	0.82[ASN][1000 genomes]
rs721030	0.80[ASN][1000 genomes]
rs73871211	0.83[ASN][1000 genomes]
rs73871221	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7611785	0.91[ASN][1000 genomes]
rs7613977	0.87[ASN][1000 genomes]
rs7614082	0.82[ASN][1000 genomes]
rs7614253	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7615146	0.89[ASN][1000 genomes]
rs7616429	0.89[ASN][1000 genomes]
rs7620611	0.87[ASN][1000 genomes]
rs7626294	0.87[ASN][1000 genomes]
rs7628103	0.88[ASN][1000 genomes]
rs7630402	0.83[ASN][1000 genomes]
rs7634647	0.89[ASN][1000 genomes]
rs7636316	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7648433	0.86[ASN][1000 genomes]
rs7650699	0.88[ASN][1000 genomes]
rs7652161	0.86[ASN][1000 genomes]
rs7653820	0.89[ASN][1000 genomes]
rs9829827	0.81[ASN][1000 genomes]
rs9833354	0.89[ASN][1000 genomes]
rs9840395	0.87[ASN][1000 genomes]
rs9857163	0.86[ASN][1000 genomes]
rs9857613	0.86[ASN][1000 genomes]
rs9866115	0.86[ASN][1000 genomes]
rs9878902	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532633	chr3:143802417-144440646	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv591928	chr3:144050897-144822081	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2756108	chr3:144177836-144301659	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv877571	chr3:144188561-144291254	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv3379740	chr3:144225847-144433818	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1010388	chr3:144236022-144326640	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv2757895	chr3:144236202-144391387	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	esv2759185	chr3:144236202-144391387	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1013350	chr3:144239415-144326640	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv536754	chr3:144239415-144326640	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	nsv877572	chr3:144244265-144312402	Weak transcription Flanking Active TSS Enhancers Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	nsv1012719	chr3:144264442-144283362	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
13	nsv877573	chr3:144265840-144323993	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
14	nsv1014395	chr3:144268563-144283849	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:144271800-144275200	Weak transcription	Fetal Intestine Small	intestine
2	chr3:144274000-144277000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr3:144274200-144274800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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